processing-for-variant-discovery-gatk4.b37.wgs.inputs.json

{
  "PreProcessingForVariantDiscovery_GATK4.sample_name": "NA12878",
  "PreProcessingForVariantDiscovery_GATK4.ref_name": "b37",
  "PreProcessingForVariantDiscovery_GATK4.flowcell_unmapped_bams_list": "gs://gatk-test-data/wgs_ubam/NA12878_24RG/NA12878_24RG_small.txt",
  "PreProcessingForVariantDiscovery_GATK4.unmapped_bam_suffix": ".bam",
  
  "PreProcessingForVariantDiscovery_GATK4.ref_dict": "gs://gatk-legacy-bundles/b37/human_g1k_v37_decoy.dict",
  "PreProcessingForVariantDiscovery_GATK4.ref_fasta": "gs://gatk-legacy-bundles/b37/human_g1k_v37_decoy.fasta",
  "PreProcessingForVariantDiscovery_GATK4.ref_fasta_index": "gs://gatk-legacy-bundles/b37/human_g1k_v37_decoy.fasta.fai",
  "PreProcessingForVariantDiscovery_GATK4.ref_sa": "gs://gatk-legacy-bundles/b37/human_g1k_v37_decoy.fasta.sa",
  "PreProcessingForVariantDiscovery_GATK4.ref_amb": "gs://gatk-legacy-bundles/b37/human_g1k_v37_decoy.fasta.amb",
  "PreProcessingForVariantDiscovery_GATK4.ref_bwt": "gs://gatk-legacy-bundles/b37/human_g1k_v37_decoy.fasta.bwt",
  "PreProcessingForVariantDiscovery_GATK4.ref_ann": "gs://gatk-legacy-bundles/b37/human_g1k_v37_decoy.fasta.ann",
  "PreProcessingForVariantDiscovery_GATK4.ref_pac": "gs://gatk-legacy-bundles/b37/human_g1k_v37_decoy.fasta.pac",
  
  "PreProcessingForVariantDiscovery_GATK4.dbSNP_vcf": "gs://gatk-legacy-bundles/b37/dbsnp_138.b37.vcf",
  "PreProcessingForVariantDiscovery_GATK4.dbSNP_vcf_index": "gs://gatk-legacy-bundles/b37/dbsnp_138.b37.vcf.idx",
  "PreProcessingForVariantDiscovery_GATK4.known_indels_sites_VCFs": [
    "gs://gatk-legacy-bundles/b37/Mills_and_1000G_gold_standard.indels.b37.vcf"
  ],
  "PreProcessingForVariantDiscovery_GATK4.known_indels_sites_indices": [
    "gs://gatk-legacy-bundles/b37/Mills_and_1000G_gold_standard.indels.b37.vcf.idx"
  ]
}