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GPI specs #649

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pgaudet opened this issue Nov 27, 2024 · 1 comment

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pgaudet commented Nov 27, 2024 •

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From managers call

In https://geneontology.org/docs/gene-product-information-gpi-format-2.0/#8-parent-protein

@cmungall proposes to replace

"An ontology identifier for the biological entity " to "An ontology identifier for the gene product encoded by the biological entity"

Current list of examples:

default would be gene product if the information is not provided in the GPI
(consider adding a QC check that gene product is not allowed in GPI)
protein PR:000000001
~~protein-coding gene SO:0001217~~
~~gene SO:0000704~~
ncRNA SO:0000655
any subtype of ncRNA in the Sequence Ontology, including ncRNA-coding gene SO:0001263
protein-containing complex GO:0032991

pgaudet assigned suzialeksander

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suzialeksander commented Dec 10, 2024

@pgaudet is adding to managers on Dec 17

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