Review annotations to GO:0019551 glutamate catabolic process to 2-oxoglutarate

[raymond91125]

Dear all,

The proposal has been made to obsolete GO:0019551 glutamate catabolic process to 2-oxoglutarate
see geneontology/go-ontology#28800

• This is a single-step molecular function.

Experimental annotations that need to be reviewed are here:
https://docs.google.com/spreadsheets/d/1EaA7-1bqWRmVfNfpOHF6RqHdmUGunrZ2GJTsDdt3ihQ/edit?gid=0#gid=0

Impacted groups:
CGD 1
MGI 2
PomBase 1 fixed
RGD 2

** Group contacts: https://github.com/geneontology/go-site/blob/master/metadata/group-contacts.csv

Mappings that need to be reviewed: (InterPro2GO, UniProt-Keywords, UniRule)
InterPro:IPR007780 NAD-glutamate dehydrogenase, bacteria > GO:glutamate catabolic process to 2-oxoglutarate ; GO:0019551
InterPro:IPR016210 NAD-dependent glutamate dehydrogenase, eukaryotes > GO:glutamate catabolic process to 2-oxoglutarate ; GO:0019551
InterPro:IPR028971 NAD-glutamate dehydrogenase, catalytic domain > GO:glutamate catabolic process to 2-oxoglutarate ; GO:0019551
UniRule:UR000380776 > GO:glutamate catabolic process to 2-oxoglutarate ; GO:0019551

Thanks.

[jlewsmith]

CGD done

[sarach06]

Hi Raymond,
Thank you very much. The InterPro entries you mentioned above are not mapped to GO:0019551, also I checked and we don't have any entries with this GO term.

Best regards,
Sara

[LiNiMGI]

I didn't find the two annotations on the spreadsheet in MGI (Noctua).
So I will say MGI done. Thanks!

[pgaudet]

@LiNiMGI Are you sure?

http://noctua.geneontology.org/workbench/noctua-landing-page/?offset=0&limit=50&term=GO:0006107&expand&debug

[LiNiMGI]

@pgaudet i don't see any MGI annotation to GO:0019551, the link you provide shows annotation to GO:0006107, did I misunderstand anything here? I thought this ticket is to review two MGI annotations to GO:0019551...Thanks.

[pgaudet]

@LiNiMGI OK never mind! Not sure what I was looking at!

[pgaudet]

The term has been obsoleted. Remaining annotations will appear in error reports.