From 80b98bba84bea75a3cc6f3391b73a1e9cdd007dc Mon Sep 17 00:00:00 2001 From: Pascale Gaudet Date: Thu, 24 Nov 2022 17:39:46 +0100 Subject: [PATCH] obsoleted terms for #22455 --- src/ontology/go-edit.obo | 29 +++++++++++++++++------------ 1 file changed, 17 insertions(+), 12 deletions(-) diff --git a/src/ontology/go-edit.obo b/src/ontology/go-edit.obo index a638a42824..caf172a15b 100644 --- a/src/ontology/go-edit.obo +++ b/src/ontology/go-edit.obo @@ -63191,12 +63191,13 @@ intersection_of: has_primary_output CHEBI:350546 ! serotonin(1+) [Term] id: GO:0006588 -name: activation of tryptophan 5-monooxygenase activity +name: obsolete activation of tryptophan 5-monooxygenase activity namespace: biological_process -def: "The process in which the tryptophan 5-monooxygenase enzyme is changed so that it can carry out its enzymatic activity." [GOC:dph, GOC:tb] +def: "OBSOLETE. The process in which the tryptophan 5-monooxygenase enzyme is changed so that it can carry out its enzymatic activity." [GOC:dph, GOC:tb] +comment: This term was obsoleted because it represents a molecular function. synonym: "tryptophan hydroxylase activation" RELATED [GOC:dph, GOC:tb] -is_a: GO:0032770 ! positive regulation of monooxygenase activity -relationship: part_of GO:0006587 ! serotonin biosynthetic process from tryptophan +property_value: term_tracker_item https://github.com/geneontology/go-ontology/issues/22455 xsd:anyURI +is_obsolete: true [Term] id: GO:0006589 @@ -176601,12 +176602,14 @@ intersection_of: regulates GO:0004673 ! protein histidine kinase activity [Term] id: GO:0032111 -name: activation of protein histidine kinase activity +name: obsolete activation of protein histidine kinase activity namespace: biological_process -def: "Any process that initiates the activity of an inactive protein histidine kinase." [GOC:mah] +def: "OBSOLETE. Any process that initiates the activity of an inactive protein histidine kinase." [GOC:mah] +comment: This term was obsoleted because it represents a molecular function. synonym: "protein histidine kinase activator" RELATED [] -is_a: GO:0010864 ! positive regulation of protein histidine kinase activity -is_a: GO:0032147 ! activation of protein kinase activity +property_value: term_tracker_item https://github.com/geneontology/go-ontology/issues/22455 xsd:anyURI +is_obsolete: true +consider: GO:0030295 [Term] id: GO:0032112 @@ -409210,12 +409213,14 @@ creation_date: 2012-05-02T03:19:35Z [Term] id: GO:0097297 -name: activation of cysteine-type endopeptidase activity involved in execution phase of apoptosis +name: obsolete activation of cysteine-type endopeptidase activity involved in execution phase of apoptosis namespace: biological_process -def: "Any process that initiates the activity of an inactive cysteine-type endopeptidase involved in the execution phase of apoptosis." [GOC:mtg_apoptosis] -comment: Note that this term should only be used to annotate gene products directly involved in the initiation or start up of an inactive cysteine-type endopeptidase activity involved in the execution phase of apoptosis (also known as an effector caspase). If the evidence provided is not sufficient to account for direct activation of this enzymatic activity, consider using the more generic terms GO:2001272 positive regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis or GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process. +def: "OBSOLETE. Any process that initiates the activity of an inactive cysteine-type endopeptidase involved in the execution phase of apoptosis." [GOC:mtg_apoptosis] +comment: This term was obsoleted because it represents a molecular function. synonym: "activation of effector caspase activity" NARROW [] -is_a: GO:2001272 ! positive regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis +property_value: term_tracker_item https://github.com/geneontology/go-ontology/issues/22455 xsd:anyURI +is_obsolete: true +consider: GO:0016505 created_by: pr creation_date: 2012-05-02T03:23:01Z