From 295dba8da8c9ab84e23bb7f70719b83843d66338 Mon Sep 17 00:00:00 2001 From: Pascale Gaudet Date: Thu, 12 Sep 2024 11:35:14 +0200 Subject: [PATCH] obsoleted terms for #22455 --- src/ontology/go-edit.obo | 159 ++++++++++++++++++--------------------- 1 file changed, 75 insertions(+), 84 deletions(-) diff --git a/src/ontology/go-edit.obo b/src/ontology/go-edit.obo index f78db657d5..b37035d368 100644 --- a/src/ontology/go-edit.obo +++ b/src/ontology/go-edit.obo @@ -173192,19 +173192,18 @@ intersection_of: regulates GO:0060175 ! brain-derived neurotrophic factor recept [Term] id: GO:0031552 -name: negative regulation of brain-derived neurotrophic factor-activated receptor activity +name: obsolete negative regulation of brain-derived neurotrophic factor-activated receptor activity namespace: biological_process -def: "Any process that stops, prevents, or reduces the frequency, rate or extent of brain-derived neurotrophic factor-activated receptor activity." [GOC:mah] -subset: gocheck_obsoletion_candidate +def: "OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of brain-derived neurotrophic factor-activated receptor activity." [GOC:mah] +comment: This term was obsoleted because it represents a molecular function. synonym: "down regulation of brain-derived neurotrophic factor receptor activity" EXACT [] synonym: "down-regulation of brain-derived neurotrophic factor receptor activity" EXACT [] synonym: "downregulation of brain-derived neurotrophic factor receptor activity" EXACT [] synonym: "inhibition of brain-derived neurotrophic factor receptor activity" NARROW [] synonym: "negative regulation of BDNF receptor activity" EXACT [] synonym: "negative regulation of brain-derived neurotrophic factor receptor activity" EXACT [GOC:bf, GOC:signaling] -is_a: GO:0031549 ! negative regulation of brain-derived neurotrophic factor receptor signaling pathway -intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0060175 ! brain-derived neurotrophic factor receptor activity +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22455" xsd:anyURI +is_obsolete: true [Term] id: GO:0031553 @@ -173557,21 +173556,18 @@ relationship: regulates GO:0051209 {http://purl.obolibrary.org/obo/IAO_0000233=" [Term] id: GO:0031586 -name: negative regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity +name: obsolete negative regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity namespace: biological_process -def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of the inositol 1,4,5-trisphosphate-sensitive calcium-release channel." [GOC:dph, GOC:mah, GOC:signaling] -subset: gocheck_obsoletion_candidate +def: "OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of the inositol 1,4,5-trisphosphate-sensitive calcium-release channel." [GOC:dph, GOC:mah, GOC:signaling] +comment: This term was obsoleted because it represents a molecular function. synonym: "down regulation of IP3 receptor activity" EXACT [] synonym: "down-regulation of IP3 receptor activity" EXACT [] synonym: "downregulation of IP3 receptor activity" EXACT [] synonym: "inhibition of IP3 receptor activity" NARROW [] synonym: "negative regulation of inositol 1,4,5-trisphosphate receptor activity" EXACT [GOC:signaling] synonym: "negative regulation of IP3 receptor activity" RELATED [GOC:dph] -is_a: GO:0009968 ! negative regulation of signal transduction -intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0005220 ! inositol 1,4,5-trisphosphate-gated calcium channel activity -relationship: negatively_regulates GO:0019722 {http://purl.obolibrary.org/obo/IAO_0000233="https://github.com/geneontology/go-ontology/issues/13926"} ! calcium-mediated signaling -relationship: negatively_regulates GO:0051209 {http://purl.obolibrary.org/obo/IAO_0000233="https://github.com/geneontology/go-ontology/issues/13926"} ! release of sequestered calcium ion into cytosol +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22455" xsd:anyURI +is_obsolete: true [Term] id: GO:0031587 @@ -404111,12 +404107,12 @@ creation_date: 2009-09-11T10:46:13Z [Term] id: GO:0090073 -name: positive regulation of protein homodimerization activity +name: obsolete positive regulation of protein homodimerization activity namespace: biological_process -def: "Any process that increases the frequency, rate or extent of protein homodimerization, interacting selectively with an identical protein to form a homodimer." [GOC:dph, GOC:tb] -subset: gocheck_obsoletion_candidate -intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0042803 ! protein homodimerization activity +def: "OBSOLETE. Any process that increases the frequency, rate or extent of protein homodimerization, interacting selectively with an identical protein to form a homodimer." [GOC:dph, GOC:tb] +comment: This term was obsoleted because it represents a molecular function. +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22455" xsd:anyURI +is_obsolete: true created_by: tb creation_date: 2009-09-11T11:15:40Z @@ -472364,9 +472360,10 @@ creation_date: 2012-04-03T11:02:03Z [Term] id: GO:1900261 -name: positive regulation of RNA-dependent RNA polymerase activity +name: obsolete positive regulation of RNA-dependent RNA polymerase activity namespace: biological_process -def: "Any process that activates or increases the frequency, rate or extent of RNA-directed 5'-3' RNA polymerase activity." [GOC:pf, GOC:TermGenie] +def: "OBSOLETE. Any process that activates or increases the frequency, rate or extent of RNA-directed 5'-3' RNA polymerase activity." [GOC:pf, GOC:TermGenie] +comment: This term was obsoleted because it represents a molecular function. subset: gocheck_obsoletion_candidate synonym: "activation of 3D polymerase activity" EXACT [GOC:TermGenie] synonym: "activation of nucleoside-triphosphate:RNA nucleotidyltransferase (RNA-directed)" EXACT [GOC:TermGenie] @@ -472471,8 +472468,8 @@ synonym: "upregulation of RNA-dependent RNA polymerase activity" EXACT [GOC:Term synonym: "upregulation of RNA-dependent RNA replicase activity" EXACT [GOC:TermGenie] synonym: "upregulation of RNA-directed RNA polymerase activity" EXACT [GOC:TermGenie] synonym: "upregulation of transcriptase" BROAD [GOC:TermGenie] -intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0003968 ! RNA-dependent RNA polymerase activity +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22455" xsd:anyURI +is_obsolete: true created_by: tb creation_date: 2012-04-03T11:02:11Z @@ -504953,10 +504950,10 @@ creation_date: 2013-05-21T19:24:30Z [Term] id: GO:1902160 -name: negative regulation of cyclic nucleotide-gated ion channel activity +name: obsolete negative regulation of cyclic nucleotide-gated ion channel activity namespace: biological_process -def: "Any process that stops, prevents or reduces the frequency, rate or extent of cyclic nucleotide-gated ion channel activity." [GOC:TermGenie, PMID:11420311] -subset: gocheck_obsoletion_candidate +def: "OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of cyclic nucleotide-gated ion channel activity." [GOC:TermGenie, PMID:11420311] +comment: This term was obsoleted because it represents a molecular function. synonym: "down regulation of cyclic nucleotide activated ion channel activity" EXACT [GOC:TermGenie] synonym: "down regulation of cyclic nucleotide gated ion channel activity" EXACT [GOC:TermGenie] synonym: "down regulation of cyclic nucleotide-activated ion channel activity" EXACT [GOC:TermGenie] @@ -504976,8 +504973,8 @@ synonym: "inhibition of cyclic nucleotide-gated ion channel activity" NARROW [GO synonym: "negative regulation of cyclic nucleotide activated ion channel activity" EXACT [GOC:TermGenie] synonym: "negative regulation of cyclic nucleotide gated ion channel activity" EXACT [GOC:TermGenie] synonym: "negative regulation of cyclic nucleotide-activated ion channel activity" EXACT [GOC:TermGenie] -intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0043855 ! cyclic nucleotide-activated monoatomic ion channel activity +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22455" xsd:anyURI +is_obsolete: true created_by: sl creation_date: 2013-05-21T19:24:35Z @@ -518145,10 +518142,10 @@ creation_date: 2014-05-06T09:11:55Z [Term] id: GO:1902963 -name: negative regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process +name: obsolete negative regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process namespace: biological_process -def: "Any process that stops, prevents or reduces the frequency, rate or extent of metalloendopeptidase activity involved in amyloid precursor protein catabolic process." [GO_REF:0000059, GOC:sjp, GOC:TermGenie, PMID:18362153] -subset: gocheck_obsoletion_candidate +def: "OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of metalloendopeptidase activity involved in amyloid precursor protein catabolic process." [GO_REF:0000059, GOC:sjp, GOC:TermGenie, PMID:18362153] +comment: This term was obsoleted because it represents a molecular function. synonym: "down regulation of metalloendopeptidase activity involved in amyloid precursor protein breakdown" EXACT [GOC:TermGenie] synonym: "down regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process" EXACT [GOC:TermGenie] synonym: "down regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolism" EXACT [GOC:TermGenie] @@ -518238,9 +518235,8 @@ synonym: "negative regulation of metalloendoproteinase activity involved in amyl synonym: "negative regulation of metalloendoproteinase activity involved in amyloid precursor protein degradation" EXACT [GOC:TermGenie] synonym: "negative regulation of metalloendoproteinase activity involved in APP catabolic process" EXACT [GOC:TermGenie] synonym: "negative regulation of metalloendoproteinase activity involved in APP catabolism" EXACT [GOC:TermGenie] -intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:1902945 ! metalloendopeptidase activity involved in amyloid precursor protein catabolic process -relationship: negatively_regulates GO:0042987 {http://purl.obolibrary.org/obo/IAO_0000233="https://github.com/geneontology/go-ontology/issues/13926"} ! amyloid precursor protein catabolic process +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22455" xsd:anyURI +is_obsolete: true created_by: sjp creation_date: 2014-05-06T09:12:01Z @@ -523817,10 +523813,10 @@ creation_date: 2014-08-11T12:53:30Z [Term] id: GO:1903280 -name: negative regulation of calcium:sodium antiporter activity +name: obsolete negative regulation of calcium:sodium antiporter activity namespace: biological_process -def: "Any process that stops, prevents or reduces the frequency, rate or extent of calcium:sodium antiporter activity." [GO_REF:0000059, GOC:BHF, GOC:mtg_cardiac_conduct_nov11, GOC:rl, GOC:TermGenie, PMID:19683723] -subset: gocheck_obsoletion_candidate +def: "OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of calcium:sodium antiporter activity." [GO_REF:0000059, GOC:BHF, GOC:mtg_cardiac_conduct_nov11, GOC:rl, GOC:TermGenie, PMID:19683723] +comment: This term was obsoleted because it represents a molecular function. synonym: "down regulation of calcium:sodium antiporter activity" EXACT [GOC:TermGenie] synonym: "down regulation of mitochondrial sodium/calcium ion exchange" RELATED [GOC:TermGenie] synonym: "down regulation of sodium/calcium exchanger" EXACT [GOC:TermGenie] @@ -523840,8 +523836,8 @@ synonym: "inhibition of sodium:calcium exchange" RELATED [GOC:TermGenie] synonym: "negative regulation of mitochondrial sodium/calcium ion exchange" RELATED [GOC:TermGenie] synonym: "negative regulation of sodium/calcium exchanger" EXACT [GOC:TermGenie] synonym: "negative regulation of sodium:calcium exchange" RELATED [GOC:TermGenie] -intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0005432 ! calcium:sodium antiporter activity +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22455" xsd:anyURI +is_obsolete: true created_by: rl creation_date: 2014-08-11T12:53:38Z @@ -529429,10 +529425,10 @@ creation_date: 2014-11-05T21:41:22Z [Term] id: GO:1903591 -name: negative regulation of lysozyme activity +name: obsolete negative regulation of lysozyme activity namespace: biological_process -def: "Any process that stops, prevents or reduces the frequency, rate or extent of lysozyme activity." [GO_REF:0000059, GOC:mr, GOC:TermGenie, PMID:23954697] -subset: gocheck_obsoletion_candidate +def: "OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of lysozyme activity." [GO_REF:0000059, GOC:mr, GOC:TermGenie, PMID:23954697] +comment: This term was obsoleted because it represents a molecular function. synonym: "down regulation of 1,4-N-acetylmuramidase activity" EXACT [GOC:TermGenie] synonym: "down regulation of globulin G" RELATED [GOC:TermGenie] synonym: "down regulation of globulin G1" RELATED [GOC:TermGenie] @@ -529492,8 +529488,8 @@ synonym: "negative regulation of muramidase activity" EXACT [GOC:TermGenie] synonym: "negative regulation of N,O-diacetylmuramidase activity" EXACT [GOC:TermGenie] synonym: "negative regulation of peptidoglycan N-acetylmuramoylhydrolase activity" EXACT [GOC:TermGenie] synonym: "negative regulation of PR1-lysozyme" RELATED [GOC:TermGenie] -intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0003796 ! lysozyme activity +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22455" xsd:anyURI +is_obsolete: true created_by: mr creation_date: 2014-11-05T21:41:30Z @@ -534361,10 +534357,10 @@ creation_date: 2015-02-05T13:26:14Z [Term] id: GO:1903869 -name: negative regulation of methylenetetrahydrofolate reductase (NAD(P)H) activity +name: obsolete negative regulation of methylenetetrahydrofolate reductase (NAD(P)H) activity namespace: biological_process -def: "Any process that stops, prevents or reduces the frequency, rate or extent of methylenetetrahydrofolate reductase (NAD(P)H) activity." [GO_REF:0000059, GOC:BHF, GOC:rph, GOC:TermGenie, PMID:24769206] -subset: gocheck_obsoletion_candidate +def: "OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of methylenetetrahydrofolate reductase (NAD(P)H) activity." [GO_REF:0000059, GOC:BHF, GOC:rph, GOC:TermGenie, PMID:24769206] +comment: This term was obsoleted because it represents a molecular function. synonym: "down regulation of 5,10-CH(2)-H(4)folate reductase activity" EXACT [GOC:TermGenie] synonym: "down regulation of 5,10-CH2-H4folate reductase activity" EXACT [GOC:TermGenie] synonym: "down regulation of 5,10-methylenetetrahydrofolate reductase (FADH(2)) activity" RELATED [GOC:TermGenie] @@ -534479,8 +534475,8 @@ synonym: "negative regulation of methylenetetrahydrofolate reductase (NADPH2)" E synonym: "negative regulation of methylenetetrahydrofolate reductase [NAD(P)H]" RELATED [GOC:TermGenie] synonym: "negative regulation of N5,10-methylenetetrahydrofolate reductase activity" EXACT [GOC:TermGenie] synonym: "negative regulation of N5,N10-methylenetetrahydrofolate reductase activity" EXACT [GOC:TermGenie] -intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0004489 ! methylenetetrahydrofolate reductase (NAD(P)H) activity +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22455" xsd:anyURI +is_obsolete: true created_by: rph creation_date: 2015-02-05T13:26:25Z @@ -536303,10 +536299,10 @@ creation_date: 2015-02-24T10:32:16Z [Term] id: GO:1903954 -name: positive regulation of voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization +name: obsolete positive regulation of voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization namespace: biological_process -def: "Any process that activates or increases the frequency, rate or extent of voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization." [GO_REF:0000059, GOC:BHF, GOC:mtg_cardiac_conduct_nov11, GOC:nc, GOC:TermGenie, PMID:25281747] -subset: gocheck_obsoletion_candidate +def: "OBSOLETE. Any process that activates or increases the frequency, rate or extent of voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization." [GO_REF:0000059, GOC:BHF, GOC:mtg_cardiac_conduct_nov11, GOC:nc, GOC:TermGenie, PMID:25281747] +comment: This term was obsoleted because it represents a GO-CAM model. synonym: "activation of voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization" NARROW [GOC:TermGenie] synonym: "activation of voltage-gated potassium channel activity involved in atrial cardiomyocyte action potential repolarization" NARROW [GOC:TermGenie] synonym: "positive regulation of voltage-gated potassium channel activity involved in atrial cardiomyocyte action potential repolarization" EXACT [GOC:TermGenie] @@ -536316,9 +536312,8 @@ synonym: "up-regulation of voltage-gated potassium channel activity involved in synonym: "up-regulation of voltage-gated potassium channel activity involved in atrial cardiomyocyte action potential repolarization" EXACT [GOC:TermGenie] synonym: "upregulation of voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization" EXACT [GOC:TermGenie] synonym: "upregulation of voltage-gated potassium channel activity involved in atrial cardiomyocyte action potential repolarization" EXACT [GOC:TermGenie] -intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0086089 ! voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization -relationship: positively_regulates GO:0086013 {http://purl.obolibrary.org/obo/IAO_0000233="https://github.com/geneontology/go-ontology/issues/13926"} ! membrane repolarization during cardiac muscle cell action potential +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22455" xsd:anyURI +is_obsolete: true created_by: nc creation_date: 2015-02-24T10:32:24Z @@ -540740,11 +540735,10 @@ creation_date: 2015-05-15T08:18:29Z [Term] id: GO:1904219 -name: positive regulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity +name: obsolete positive regulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity namespace: biological_process -def: "Any process that activates or increases the frequency, rate or extent of CDP-diacylglycerol-serine O-phosphatidyltransferase activity." [GO_REF:0000059, GOC:BHF, GOC:rl, GOC:TermGenie, PMID:16120614] -comment: Serinc proteins form a complex with serine and sphingolipid biosynthesis enzymes and regulates their activity through regulation of availability of the substrate -subset: gocheck_obsoletion_candidate +def: "OBSOLETE. Any process that activates or increases the frequency, rate or extent of CDP-diacylglycerol-serine O-phosphatidyltransferase activity." [GO_REF:0000059, GOC:BHF, GOC:rl, GOC:TermGenie, PMID:16120614] +comment: This term was obsoleted because it represents a molecular function. synonym: "activation of CDP-diacylglycerol-L-serine O-phosphatidyltransferase activity" NARROW [GOC:TermGenie] synonym: "activation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity" NARROW [GOC:TermGenie] synonym: "activation of CDP-diacylglycerol:L-serine 3-O-phosphatidyltransferase activity" NARROW [GOC:TermGenie] @@ -540814,8 +540808,8 @@ synonym: "upregulation of cytidine diphosphoglyceride-serine O-phosphatidyltrans synonym: "upregulation of phosphatidylserine synthase activity" EXACT [GOC:TermGenie] synonym: "upregulation of phosphatidylserine synthetase activity" EXACT [GOC:TermGenie] synonym: "upregulation of PS synthase activity" EXACT [GOC:TermGenie] -intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0003882 ! CDP-diacylglycerol-serine O-phosphatidyltransferase activity +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22455" xsd:anyURI +is_obsolete: true created_by: rl creation_date: 2015-05-15T08:18:35Z @@ -542446,10 +542440,10 @@ creation_date: 2015-05-20T14:05:00Z [Term] id: GO:1904255 -name: negative regulation of iron ion transmembrane transporter activity +name: obsolete negative regulation of iron ion transmembrane transporter activity namespace: biological_process -def: "Any process that stops, prevents or reduces the frequency, rate or extent of an iron transmembrane transporter activity." [GO_REF:0000059, GOC:BHF, GOC:kom, GOC:TermGenie, PMID:15514116] -subset: gocheck_obsoletion_candidate +def: "OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of an iron transmembrane transporter activity." [GO_REF:0000059, GOC:BHF, GOC:kom, GOC:TermGenie, PMID:15514116] +comment: This term was obsoleted because it represents a molecular function. synonym: "down regulation of iron cation channel activity" EXACT [GOC:TermGenie] synonym: "down regulation of iron channel activity" EXACT [GOC:TermGenie] synonym: "down regulation of iron-specific channel activity" EXACT [GOC:TermGenie] @@ -542465,9 +542459,8 @@ synonym: "inhibition of iron-specific channel activity" NARROW [GOC:TermGenie] synonym: "negative regulation of iron cation channel activity" EXACT [GOC:TermGenie] synonym: "negative regulation of iron channel activity" EXACT [] synonym: "negative regulation of iron-specific channel activity" EXACT [GOC:TermGenie] -intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0005381 ! iron ion transmembrane transporter activity -relationship: negatively_regulates GO:0034755 {http://purl.obolibrary.org/obo/IAO_0000233="https://github.com/geneontology/go-ontology/issues/13926"} ! iron ion transmembrane transport +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22455" xsd:anyURI +is_obsolete: true created_by: kom creation_date: 2015-05-20T14:05:06Z @@ -548070,10 +548063,10 @@ creation_date: 2015-08-26T16:24:56Z [Term] id: GO:1904605 -name: positive regulation of advanced glycation end-product receptor activity +name: obsolete positive regulation of advanced glycation end-product receptor activity namespace: biological_process -def: "Any process that activates or increases the frequency, rate or extent of advanced glycation end-product receptor activity." [GO_REF:0000059, GOC:krc, GOC:TermGenie, PMID:16503878] -subset: gocheck_obsoletion_candidate +def: "OBSOLETE. Any process that activates or increases the frequency, rate or extent of advanced glycation end-product receptor activity." [GO_REF:0000059, GOC:krc, GOC:TermGenie, PMID:16503878] +comment: This term was obsoleted because it represents a molecular function. synonym: "activation of advanced glycation end-product receptor activity" NARROW [GOC:TermGenie] synonym: "activation of AGE receptor activity" NARROW [GOC:TermGenie] synonym: "activation of RAGE activity" NARROW [GOC:TermGenie] @@ -548088,8 +548081,8 @@ synonym: "up-regulation of RAGE activity" EXACT [GOC:TermGenie] synonym: "upregulation of advanced glycation end-product receptor activity" EXACT [GOC:TermGenie] synonym: "upregulation of AGE receptor activity" EXACT [GOC:TermGenie] synonym: "upregulation of RAGE activity" EXACT [GOC:TermGenie] -intersection_of: GO:0065007 ! biological regulation -intersection_of: positively_regulates GO:0050785 ! advanced glycation end-product receptor activity +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22455" xsd:anyURI +is_obsolete: true created_by: krc creation_date: 2015-08-26T16:25:02Z @@ -553413,17 +553406,16 @@ creation_date: 2015-12-18T18:35:30Z [Term] id: GO:1904876 -name: negative regulation of DNA ligase activity +name: obsolete negative regulation of DNA ligase activity namespace: biological_process -def: "Any process that stops, prevents or reduces the frequency, rate or extent of DNA ligase activity." [GO_REF:0000059, GOC:BHF, GOC:BHF_telomere, GOC:rl, GOC:TermGenie, PMID:17389648] -subset: gocheck_obsoletion_candidate +def: "OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of DNA ligase activity." [GO_REF:0000059, GOC:BHF, GOC:BHF_telomere, GOC:rl, GOC:TermGenie, PMID:17389648] +comment: This term was obsoleted because it represents a molecular function. synonym: "down regulation of DNA ligase activity" EXACT [GOC:TermGenie] synonym: "down-regulation of DNA ligase activity" EXACT [GOC:TermGenie] synonym: "downregulation of DNA ligase activity" EXACT [GOC:TermGenie] synonym: "inhibition of DNA ligase activity" NARROW [GOC:TermGenie] -intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0003909 ! DNA ligase activity -relationship: negatively_regulates GO:0006266 {http://purl.obolibrary.org/obo/IAO_0000233="https://github.com/geneontology/go-ontology/issues/13926"} ! DNA ligation +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22455" xsd:anyURI +is_obsolete: true created_by: rl creation_date: 2015-12-18T18:35:37Z @@ -570230,11 +570222,11 @@ creation_date: 2013-10-15T21:19:52Z [Term] id: GO:1905775 -name: negative regulation of DNA helicase activity +name: obsolete negative regulation of DNA helicase activity namespace: biological_process alt_id: GO:1902450 -def: "Any process that stops, prevents or reduces the frequency, rate or extent of ATP-dependent DNA helicase activity." [GOC:rb, GOC:TermGenie, PMID:13679365, PMID:19734539] -subset: gocheck_obsoletion_candidate +def: "OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of ATP-dependent DNA helicase activity." [GOC:rb, GOC:TermGenie, PMID:13679365, PMID:19734539] +comment: This term was obsoleted because it represents a molecular function. synonym: "down regulation of ATP-dependent DNA helicase activity" EXACT [GOC:TermGenie] synonym: "down regulation of DNA helicase activity" EXACT [GOC:TermGenie] synonym: "down-regulation of ATP-dependent DNA helicase activity" EXACT [GOC:TermGenie] @@ -570244,9 +570236,8 @@ synonym: "downregulation of DNA helicase activity" EXACT [GOC:TermGenie] synonym: "inhibition of ATP-dependent DNA helicase activity" NARROW [GOC:TermGenie] synonym: "inhibition of DNA helicase activity" NARROW [GOC:TermGenie] synonym: "negative regulation of ATP-dependent DNA helicase activity" EXACT [] -intersection_of: GO:0065007 ! biological regulation -intersection_of: negatively_regulates GO:0003678 ! DNA helicase activity -relationship: negatively_regulates GO:0032508 {http://purl.obolibrary.org/obo/IAO_0000233="https://github.com/geneontology/go-ontology/issues/13926"} ! DNA duplex unwinding +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/22455" xsd:anyURI +is_obsolete: true created_by: rb creation_date: 2013-10-15T21:20:01Z