From f66b4bbc62677e29e30f24e16f6c29a4707ba43c Mon Sep 17 00:00:00 2001 From: Jim Balhoff Date: Wed, 6 Mar 2024 10:32:19 -0500 Subject: [PATCH] Fix obsolete GO terms in test models. (#538) * Fix obsolete GO terms in test models. * Fix obsolete GO terms in test models. --- .../Test000-Correct_and_complete_ActivityUnit_model.ttl | 2 +- .../validation/should_pass/Test001-missing_enabled_by.ttl | 2 +- ...t018-directly_positively_regulates_MolecularFunction.ttl | 2 +- .../should_pass/Test019-happens_during_BiologicalPhase.ttl | 2 +- .../should_pass/Test026-has_output_2_MolecularEntity.ttl | 2 +- .../should_pass/Test027-has_input_2_MolecularEntity.ttl | 2 +- .../Test000-Correct_and_complete_ActivityUnit_model.ttl | 6 +++--- .../models/should_pass/Test001-missing_enabled_by.ttl | 6 +++--- ...t018-directly_positively_regulates_MolecularFunction.ttl | 6 +++--- .../should_pass/Test019-happens_during_BiologicalPhase.ttl | 6 +++--- .../should_pass/Test026-has_output_2_MolecularEntity.ttl | 6 +++--- .../should_pass/Test027-has_input_2_MolecularEntity.ttl | 6 +++--- 12 files changed, 24 insertions(+), 24 deletions(-) diff --git a/minerva-core/src/test/resources/validation/should_pass/Test000-Correct_and_complete_ActivityUnit_model.ttl b/minerva-core/src/test/resources/validation/should_pass/Test000-Correct_and_complete_ActivityUnit_model.ttl index 089c46da..50ad8212 100644 --- a/minerva-core/src/test/resources/validation/should_pass/Test000-Correct_and_complete_ActivityUnit_model.ttl +++ b/minerva-core/src/test/resources/validation/should_pass/Test000-Correct_and_complete_ActivityUnit_model.ttl @@ -128,7 +128,7 @@ ### http://model.geneontology.org/5d251e6800000000/5d251e6800000003 rdf:type owl:NamedIndividual , - ; + ; "434.9801025390625"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string ; "2019-07-11"^^xsd:string ; diff --git a/minerva-core/src/test/resources/validation/should_pass/Test001-missing_enabled_by.ttl b/minerva-core/src/test/resources/validation/should_pass/Test001-missing_enabled_by.ttl index b0288834..9e276ee2 100644 --- a/minerva-core/src/test/resources/validation/should_pass/Test001-missing_enabled_by.ttl +++ b/minerva-core/src/test/resources/validation/should_pass/Test001-missing_enabled_by.ttl @@ -204,7 +204,7 @@ ### http://model.geneontology.org/5d27d1cf00000038/5d27d1cf00000050 rdf:type owl:NamedIndividual , - ; + ; "148.75"^^xsd:string ; "55"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/minerva-core/src/test/resources/validation/should_pass/Test018-directly_positively_regulates_MolecularFunction.ttl b/minerva-core/src/test/resources/validation/should_pass/Test018-directly_positively_regulates_MolecularFunction.ttl index ccc78c7b..a756f389 100644 --- a/minerva-core/src/test/resources/validation/should_pass/Test018-directly_positively_regulates_MolecularFunction.ttl +++ b/minerva-core/src/test/resources/validation/should_pass/Test018-directly_positively_regulates_MolecularFunction.ttl @@ -237,7 +237,7 @@ ### http://model.geneontology.org/5d27d1cf00000407/5d27d1cf00000418 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/minerva-core/src/test/resources/validation/should_pass/Test019-happens_during_BiologicalPhase.ttl b/minerva-core/src/test/resources/validation/should_pass/Test019-happens_during_BiologicalPhase.ttl index 31991279..f5391950 100644 --- a/minerva-core/src/test/resources/validation/should_pass/Test019-happens_during_BiologicalPhase.ttl +++ b/minerva-core/src/test/resources/validation/should_pass/Test019-happens_during_BiologicalPhase.ttl @@ -237,7 +237,7 @@ ### http://model.geneontology.org/5d27d1cf00000408/5d27d1cf00000418 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/minerva-core/src/test/resources/validation/should_pass/Test026-has_output_2_MolecularEntity.ttl b/minerva-core/src/test/resources/validation/should_pass/Test026-has_output_2_MolecularEntity.ttl index 45f40463..076df399 100644 --- a/minerva-core/src/test/resources/validation/should_pass/Test026-has_output_2_MolecularEntity.ttl +++ b/minerva-core/src/test/resources/validation/should_pass/Test026-has_output_2_MolecularEntity.ttl @@ -240,7 +240,7 @@ ### http://model.geneontology.org/5d27d1cf00000588/5d27d1cf00000600 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/minerva-core/src/test/resources/validation/should_pass/Test027-has_input_2_MolecularEntity.ttl b/minerva-core/src/test/resources/validation/should_pass/Test027-has_input_2_MolecularEntity.ttl index 589a0419..5816abf2 100644 --- a/minerva-core/src/test/resources/validation/should_pass/Test027-has_input_2_MolecularEntity.ttl +++ b/minerva-core/src/test/resources/validation/should_pass/Test027-has_input_2_MolecularEntity.ttl @@ -311,7 +311,7 @@ ### http://model.geneontology.org/5d27d1cf00000607/5d27d1cf00000625 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/minerva-server/src/test/resources/models/should_pass/Test000-Correct_and_complete_ActivityUnit_model.ttl b/minerva-server/src/test/resources/models/should_pass/Test000-Correct_and_complete_ActivityUnit_model.ttl index 59b5ee7a..de9baf0d 100644 --- a/minerva-server/src/test/resources/models/should_pass/Test000-Correct_and_complete_ActivityUnit_model.ttl +++ b/minerva-server/src/test/resources/models/should_pass/Test000-Correct_and_complete_ActivityUnit_model.ttl @@ -170,8 +170,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -268,7 +268,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d251e6800000000/5d251e6800000003 rdf:type owl:NamedIndividual , - ; + ; "434.9801025390625"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string ; "2019-07-11"^^xsd:string ; diff --git a/minerva-server/src/test/resources/models/should_pass/Test001-missing_enabled_by.ttl b/minerva-server/src/test/resources/models/should_pass/Test001-missing_enabled_by.ttl index 612a5fdb..3bed7b27 100644 --- a/minerva-server/src/test/resources/models/should_pass/Test001-missing_enabled_by.ttl +++ b/minerva-server/src/test/resources/models/should_pass/Test001-missing_enabled_by.ttl @@ -168,8 +168,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -340,7 +340,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000038/5d27d1cf00000050 rdf:type owl:NamedIndividual , - ; + ; "148.75"^^xsd:string ; "55"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/minerva-server/src/test/resources/models/should_pass/Test018-directly_positively_regulates_MolecularFunction.ttl b/minerva-server/src/test/resources/models/should_pass/Test018-directly_positively_regulates_MolecularFunction.ttl index 67778d81..13e78e95 100644 --- a/minerva-server/src/test/resources/models/should_pass/Test018-directly_positively_regulates_MolecularFunction.ttl +++ b/minerva-server/src/test/resources/models/should_pass/Test018-directly_positively_regulates_MolecularFunction.ttl @@ -185,8 +185,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -389,7 +389,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000407/5d27d1cf00000418 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/minerva-server/src/test/resources/models/should_pass/Test019-happens_during_BiologicalPhase.ttl b/minerva-server/src/test/resources/models/should_pass/Test019-happens_during_BiologicalPhase.ttl index c12f3392..2d7bbe87 100644 --- a/minerva-server/src/test/resources/models/should_pass/Test019-happens_during_BiologicalPhase.ttl +++ b/minerva-server/src/test/resources/models/should_pass/Test019-happens_during_BiologicalPhase.ttl @@ -185,8 +185,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -389,7 +389,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000408/5d27d1cf00000418 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/minerva-server/src/test/resources/models/should_pass/Test026-has_output_2_MolecularEntity.ttl b/minerva-server/src/test/resources/models/should_pass/Test026-has_output_2_MolecularEntity.ttl index c92e650d..f2efd830 100644 --- a/minerva-server/src/test/resources/models/should_pass/Test026-has_output_2_MolecularEntity.ttl +++ b/minerva-server/src/test/resources/models/should_pass/Test026-has_output_2_MolecularEntity.ttl @@ -177,8 +177,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -380,7 +380,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000588/5d27d1cf00000600 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string , diff --git a/minerva-server/src/test/resources/models/should_pass/Test027-has_input_2_MolecularEntity.ttl b/minerva-server/src/test/resources/models/should_pass/Test027-has_input_2_MolecularEntity.ttl index 171fa5eb..a542bd6d 100644 --- a/minerva-server/src/test/resources/models/should_pass/Test027-has_input_2_MolecularEntity.ttl +++ b/minerva-server/src/test/resources/models/should_pass/Test027-has_input_2_MolecularEntity.ttl @@ -177,8 +177,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty . rdf:type owl:Class . -### http://purl.obolibrary.org/obo/GO_0006306 - rdf:type owl:Class . +### http://purl.obolibrary.org/obo/GO_0043414 + rdf:type owl:Class . ### http://purl.obolibrary.org/obo/GO_0009008 @@ -455,7 +455,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty . ### http://model.geneontology.org/5d27d1cf00000607/5d27d1cf00000625 rdf:type owl:NamedIndividual , - ; + ; "75"^^xsd:string ; "75"^^xsd:string ; "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,