Using convert to convert file.vcf to file.maf returns empty file

[jaybee84]

Command:

docker run -it --rm node:8.12.0  npx genome-nexus-cli convert file.vcf 

Returns:

npx: installed 86 in 5.465s
Chromosome	Start_Position	End_Position	Reference_Allele	Tumor_Seq_Allele2

Expected:
Variants and annotation values in each of the columns

Example content of vcf file:

chrY	56880089	.	T	C	8	PASS	.	GT:GQ:DP:AD:VAF:PL	0/1:8:3:1,2:0.666667:7,0,31

[allaway]

I have the same error with docker.

If I run via conda, I get more info, but it still fails:

/home/ssm-user/anaconda3/envs/genome-nexus-env/lib/node_modules/genome-nexus-cli/lib/convert.js:37
            console.log(MafRecord.Chromosome + "\t" + MafRecord.Start_Position + "\t" + MafRecord.End_Position + "\t" + MafRecord.Reference_Allele + "\t" + MafRecord.Tumor_Seq_Allele2);
                                  ^

TypeError: Cannot read property 'Chromosome' of undefined
    at /home/ssm-user/anaconda3/envs/genome-nexus-env/lib/node_modules/genome-nexus-cli/lib/convert.js:37:35
    at /home/ssm-user/anaconda3/envs/genome-nexus-env/lib/node_modules/genome-nexus-cli/node_modules/line-reader/lib/line_reader.js:279:15
    at getLine (/home/ssm-user/anaconda3/envs/genome-nexus-env/lib/node_modules/genome-nexus-cli/node_modules/line-reader/lib/line_reader.js:166:7)
    at Object.nextLine (/home/ssm-user/anaconda3/envs/genome-nexus-env/lib/node_modules/genome-nexus-cli/node_modules/line-reader/lib/line_reader.js:183:7)
    at Immediate.readNext (/home/ssm-user/anaconda3/envs/genome-nexus-env/lib/node_modules/genome-nexus-cli/node_modules/line-reader/lib/line_reader.js:269:14)
    at processImmediate (internal/timers.js:464:21)

[ldelgado-serrano]

I got the same using docker, an empty file only with the header. Is there any solution to this?