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can‘t deal tumor only vcf ? #5

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user-tq opened this issue Jul 31, 2024 · 1 comment
Open

can‘t deal tumor only vcf ? #5

user-tq opened this issue Jul 31, 2024 · 1 comment

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@user-tq
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user-tq commented Jul 31, 2024

erro

Exception: The tumor_sample and normal_sample are expected together in the header. Found only one of them

my vcf

......
##source=Mutect2
##tumor_sample=202311
#CHROM  POS     ID      REF     ALT     QUAL    FILTER  INFO    FORMAT  202311
1       780785  .       T       A       .       PASS    AS_FilterStatus=SITE;AS_SB_TABLE=0,0|0,0;DP=1;ECNT=1;GERMQ=51;MBQ=0,30;MFRL=0,0;MMQ=60,60;MPOS=16;POPAF=7.30;TLOD=3.18      GT:AD:AF:DP:F1R2:F2R1:FAD:SB    0/1:0,1:0.667:1:0,1:0,0:0,1:0,0,0,1

It seems that the script must have tumor normal.

@rmadupuri
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rmadupuri commented Jul 31, 2024

Hi @user-tq, thank you for using the tool and reporting the issue. The tool currently is configured to work with tumor-normal pairs only. However, we will plan to expand it to support tumor-only VCFs.

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