From 94f445ffb7e9e46dd916370a1fa5f0117bd1506c Mon Sep 17 00:00:00 2001
From: jonca79 <jonas.almlof@igp.uu.se>
Date: Tue, 22 Oct 2024 16:13:42 +0200
Subject: [PATCH] fix: rm multiple sample lines in MultiQC_RNA

---
 config/reports/multiqc_config_rna.yaml | 8 ++------
 1 file changed, 2 insertions(+), 6 deletions(-)

diff --git a/config/reports/multiqc_config_rna.yaml b/config/reports/multiqc_config_rna.yaml
index 26f998cc..22cca865 100644
--- a/config/reports/multiqc_config_rna.yaml
+++ b/config/reports/multiqc_config_rna.yaml
@@ -14,12 +14,8 @@ extra_fn_clean_exts: ##from this until end
     - '.duplication_metrics'
     - '.HsMetrics'
     - '.alignment_summary_metrics'
-    - type: regex
-      pattern: '_fastq[12]'
-    - type: regex
-      pattern: '_S[0-9]'
-    - type: regex
-      pattern: '_R[12]'
+    - type: regex_keep
+      pattern: '[0-9A-Z-]+'
 #extra_fn_clean_trim:   #if found in beginning or end
 #fn_ignore_dirs:
 #fn_ignore_files: