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Check compatibility with Nanopore #301

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Emkago opened this issue May 17, 2024 · 1 comment
Open

Check compatibility with Nanopore #301

Emkago opened this issue May 17, 2024 · 1 comment

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@Emkago
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Emkago commented May 17, 2024

Review existing tools in the pipeline if they can take in Nanopore data. If not, find a suitable alternative for long reads.
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Emkago commented May 27, 2024

Checking tool compatibility for MRSA workflow: all of the existing tools for identification of virulence genes and typing could be used with Nanopore data (excluding Freebayes). Others often use Prokka in addition for detection of gene norA.

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