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Add consensus calling to pathogen screening pipeline #26

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LilyAnderssonLee opened this issue Oct 3, 2024 · 0 comments
Open

Add consensus calling to pathogen screening pipeline #26

LilyAnderssonLee opened this issue Oct 3, 2024 · 0 comments
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enhancement New feature or request

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@LilyAnderssonLee
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Description of feature

Add the option of calling consensus. If there are many reads mapped to pathogen genomes, it is recommended to call consensus first and use the consensus sequence as input for downstream BLAST analysis.
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@LilyAnderssonLee