From a3400943ac25c3025c2e8a1edd31da1eb3ac2aad Mon Sep 17 00:00:00 2001
From: Sofia Stamouli <sofia.stamouli@scilifelab.se>
Date: Thu, 15 Feb 2024 12:53:26 +0100
Subject: [PATCH] work dir

---
 .github/workflows/linting.yml | 10 ++++++----
 1 file changed, 6 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/linting.yml b/.github/workflows/linting.yml
index b1d904a3..a91b5dee 100644
--- a/.github/workflows/linting.yml
+++ b/.github/workflows/linting.yml
@@ -30,9 +30,6 @@ jobs:
 
   nf-core:
     runs-on: ubuntu-latest
-    defaults:
-      run:
-        working-directory:/home/runner/work/taxprofiler/taxprofiler
     steps:
       - name: Check out pipeline code
         uses: actions/checkout@v4
@@ -70,5 +67,10 @@ jobs:
             lint_log.txt
             lint_results.md
             PR_number.txt
-            /home/runner/work/taxprofiler/taxprofiler/
 
+       - name: Upload log file artifact
+         if: failure()
+         uses: actions/upload-artifact@v3
+         with:
+           name: workdir
+           path: .work/