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Build centrifuge database #36

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LilyAnderssonLee opened this issue Nov 17, 2023 · 1 comment
Open

Build centrifuge database #36

LilyAnderssonLee opened this issue Nov 17, 2023 · 1 comment
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enhancement New feature or request

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Description of feature

Construct a centrifuge database including: Archaea, Bacteria, Fungi, Protozoa, Plasmid, virus, human.
@LilyAnderssonLee LilyAnderssonLee added the enhancement New feature or request label Nov 17, 2023
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LilyAnderssonLee commented Nov 17, 2023 •
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Memory issue caused by massive input refseq data DaehwanKimLab/centrifuge#264.

Solution: select the represent genome for each species to decrease the input sequences size, for instance using MGnify, drep or galah

@LilyAnderssonLee LilyAnderssonLee self-assigned this Nov 22, 2023
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