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3D UNet for heatmap prediction #6

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martaranzini opened this issue Jul 22, 2020 · 0 comments
Open

3D UNet for heatmap prediction #6

martaranzini opened this issue Jul 22, 2020 · 0 comments
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enhancement New feature or request

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@martaranzini
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martaranzini commented Jul 22, 2020

Develop training and testing code for a 3D UNet that can serve as post-processing helper - to include 3D information in the connected component analysis.
Goal: to output a probability map (rather than a one-hot segmentation) indicating regions most likely to contain the fetal brain. This can be combined with the output of the 2D segmentation network to select the connect component most likely to correspond to the brain.

Screenshot 2020-08-06 at 16 34 01

Issues to be considered:

  • Patch size?
  • Balance positive vs negative samples?
  • Loss function?
@martaranzini martaranzini added the enhancement New feature or request label Jul 22, 2020
@martaranzini martaranzini self-assigned this Aug 6, 2020
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