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Issue with "Reconstruction Space Generation" step #30

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Rum980 opened this issue May 15, 2023 · 0 comments
Open

Issue with "Reconstruction Space Generation" step #30

Rum980 opened this issue May 15, 2023 · 0 comments

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@Rum980
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Rum980 commented May 15, 2023

I am in the "Reconstruction Space Generation" step. While running reconstruction pipeline I received the following error. Would anyone be able to explain the error and how to resolve? I am using Python 3.10.

Code:
Traceback (most recent call last):
File "/Library/Frameworks/Python.framework/Versions/3.10/bin/niftymic_reconstruct_volume", line 33, in
sys.exit(load_entry_point('NiftyMIC', 'console_scripts', 'niftymic_reconstruct_volume')())
File "/NiftyMIC/niftymic/application/reconstruct_volume.py", line 314, in main
joint_image_mask_builder.run()
File "/NiftyMIC/niftymic/utilities/joint_image_mask_builder.py", line 52, in run
mask_sitk = thresholder.Execute(mask_sitk, 0, 0.5, 0, 1)
TypeError: BinaryThresholdImageFilter.Execute() takes 2 positional arguments but 6 were given
Traceback (most recent call last):
File "/Library/Frameworks/Python.framework/Versions/3.10/bin/niftymic_run_reconstruction_pipeline", line 33, in
sys.exit(load_entry_point('NiftyMIC', 'console_scripts', 'niftymic_run_reconstruction_pipeline')())
File "/NiftyMIC/niftymic/application/run_reconstruction_pipeline.py", line 295, in main
raise RuntimeError("Reconstruction in subject space failed")
RuntimeError: Reconstruction in subject space failed

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