diff --git a/CMake/freud-macros.cmake b/CMake/freud-macros.cmake
index 148591a69..bb16e9a0f 100644
--- a/CMake/freud-macros.cmake
+++ b/CMake/freud-macros.cmake
@@ -14,11 +14,3 @@ macro(find_package_config_first package)
     endif()
   endif()
 endmacro()
-
-# set the rpath for installing python extension modules
-function(target_set_install_rpath _target)
-  if(_using_conda)
-    set_target_properties(${_target} PROPERTIES INSTALL_RPATH_USE_LINK_PATH
-                                                True)
-  endif()
-endfunction()
diff --git a/CMakeLists.txt b/CMakeLists.txt
index 54319088c..2dc50622b 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -47,13 +47,6 @@ if(nanobind_FOUND)
     "[${nanobind_DIR},${nanobind_VERSION}]")
 endif()
 
-# shared nanobind linking seems broken on windows for unknown reasons
-if(WIN32)
-  set(freud_nanobind_linking "NB_STATIC")
-else()
-  set(freud_nanobind_linking "NB_STATIC")
-endif()
-
 # Fail fast if users have not cloned submodules.
 if(NOT WIN32)
   string(ASCII 27 Esc)
@@ -81,9 +74,27 @@ if(WIN32)
   add_compile_options(/DNOMINMAX)
 endif()
 
+# Detect when building against a conda environment set the _using_conda variable
+# for use both in this file and in the parent
+get_filename_component(_python_bin_dir ${Python_EXECUTABLE} DIRECTORY)
+if(EXISTS "${_python_bin_dir}/../conda-meta")
+  message(STATUS "Detected conda environment, setting INSTALL_RPATH_USE_LINK_PATH")
+  set(_using_conda On)
+else()
+  set(_using_conda Off)
+endif()
+
 include_directories(
-  ${PROJECT_SOURCE_DIR}/cpp/util ${PROJECT_SOURCE_DIR}/cpp/locality
-  ${PROJECT_SOURCE_DIR}/cpp/box)
+  ${PROJECT_SOURCE_DIR}/freud/box
+  ${PROJECT_SOURCE_DIR}/freud/cluster
+  ${PROJECT_SOURCE_DIR}/freud/density
+  ${PROJECT_SOURCE_DIR}/freud/diffraction
+  ${PROJECT_SOURCE_DIR}/freud/environment
+  ${PROJECT_SOURCE_DIR}/freud/locality
+  ${PROJECT_SOURCE_DIR}/freud/order
+  ${PROJECT_SOURCE_DIR}/freud/parallel
+  ${PROJECT_SOURCE_DIR}/freud/pmft
+  ${PROJECT_SOURCE_DIR}/freud/util
+  )
 
-add_subdirectory(cpp)
 add_subdirectory(freud)
diff --git a/cpp/CMakeLists.txt b/cpp/CMakeLists.txt
deleted file mode 100644
index 4cca2d59e..000000000
--- a/cpp/CMakeLists.txt
+++ /dev/null
@@ -1,52 +0,0 @@
-if(WIN32)
-  # Use add_compile_definitions when dropping support for CMake < 3.12 Force
-  # Windows to define M_PI in <cmath>
-  add_compile_options(/D_USE_MATH_DEFINES)
-  # Prevent Windows from defining min/max as macros
-  add_compile_options(/DNOMINMAX)
-endif()
-
-# Detect when building against a conda environment set the _using_conda variable
-# for use both in this file and in the parent
-get_filename_component(_python_bin_dir ${Python_EXECUTABLE} DIRECTORY)
-if(EXISTS "${_python_bin_dir}/../conda-meta")
-  message("-- Detected conda environment, setting INSTALL_RPATH_USE_LINK_PATH")
-  set(_using_conda On)
-  set(_using_conda
-      On
-      PARENT_SCOPE)
-else()
-  set(_using_conda Off)
-  set(_using_conda
-      Off
-      PARENT_SCOPE)
-endif()
-
-include(box/box-files.cmake)
-include(locality/locality-files.cmake)
-include(parallel/parallel-files.cmake)
-include(pmft/pmft-files.cmake)
-include(util/util-files.cmake)
-
-# Use a static library for the main code. A Dynamic library would be more
-# disk space efficient, but I was unable to resolve a RPATH issue where
-# any use of `INSTALL_RPATH` would result in "terminated by signal SIGKILL"
-# the moment Python attempts to load the library.
-add_library(freud STATIC ${box_sources} ${locality_sources}
-                            ${parallel_sources} ${pmft_sources} ${util_sources})
-set_target_properties(freud PROPERTIES POSITION_INDEPENDENT_CODE ON)
-target_link_libraries(freud PUBLIC TBB::tbb)
-
-target_include_directories(freud SYSTEM PUBLIC ${PROJECT_SOURCE_DIR}/extern/)
-
-# now build the python extension modules
-add_subdirectory(box)
-add_subdirectory(locality)
-add_subdirectory(parallel)
-add_subdirectory(pmft)
-add_subdirectory(util)
-
-# commented out for now, uncomment them as the conversion to pybind11 progresses
-# add_subdirectory(cluster) add_subdirectory(density)
-# add_subdirectory(diffraction) add_subdirectory(environment)
-# add_subdirectory(order) add_subdirectory(pmft)
diff --git a/cpp/box/CMakeLists.txt b/cpp/box/CMakeLists.txt
deleted file mode 100644
index 67f3fd8c6..000000000
--- a/cpp/box/CMakeLists.txt
+++ /dev/null
@@ -1,8 +0,0 @@
-# create the target and add the needed properties
-nanobind_add_module(_box module-box.cc export_Box.cc)
-target_link_libraries(_box PUBLIC TBB::tbb)
-
-target_set_install_rpath(_box)
-
-# install
-install(TARGETS _box DESTINATION freud)
diff --git a/cpp/box/box-files.cmake b/cpp/box/box-files.cmake
deleted file mode 100644
index 4dd15630a..000000000
--- a/cpp/box/box-files.cmake
+++ /dev/null
@@ -1,2 +0,0 @@
-set(box_headers box/Box.h)
-set(box_sources "")
diff --git a/cpp/cluster/CMakeLists.txt b/cpp/cluster/CMakeLists.txt
deleted file mode 100644
index 72fd07691..000000000
--- a/cpp/cluster/CMakeLists.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-add_library(_cluster OBJECT Cluster.h Cluster.cc ClusterProperties.h
-                            ClusterProperties.cc)
-
-target_link_libraries(_cluster PUBLIC TBB::tbb)
-
-# We treat the extern folder as a SYSTEM library to avoid getting any diagnostic
-# information from it. In particular, this avoids clang-tidy throwing errors due
-# to any issues in external code.
-target_include_directories(_cluster SYSTEM PUBLIC ${PROJECT_SOURCE_DIR}/extern/)
diff --git a/cpp/density/CMakeLists.txt b/cpp/density/CMakeLists.txt
deleted file mode 100644
index a2a314e45..000000000
--- a/cpp/density/CMakeLists.txt
+++ /dev/null
@@ -1,14 +0,0 @@
-add_library(
-  _density OBJECT
-  CorrelationFunction.h
-  CorrelationFunction.cc
-  GaussianDensity.h
-  GaussianDensity.cc
-  LocalDensity.h
-  LocalDensity.cc
-  RDF.h
-  RDF.cc
-  SphereVoxelization.h
-  SphereVoxelization.cc)
-
-target_link_libraries(_density PUBLIC TBB::tbb)
diff --git a/cpp/diffraction/CMakeLists.txt b/cpp/diffraction/CMakeLists.txt
deleted file mode 100644
index 03e43b439..000000000
--- a/cpp/diffraction/CMakeLists.txt
+++ /dev/null
@@ -1,9 +0,0 @@
-add_library(
-  _diffraction OBJECT
-  StaticStructureFactor.h StaticStructureFactor.cc StaticStructureFactorDebye.h
-  StaticStructureFactorDebye.cc StaticStructureFactorDirect.h
-  StaticStructureFactorDirect.cc)
-
-target_link_libraries(_diffraction PUBLIC TBB::tbb)
-
-target_include_directories(_diffraction PUBLIC ${PROJECT_SOURCE_DIR}/extern/)
diff --git a/cpp/environment/CMakeLists.txt b/cpp/environment/CMakeLists.txt
deleted file mode 100644
index 0a6ecf96a..000000000
--- a/cpp/environment/CMakeLists.txt
+++ /dev/null
@@ -1,21 +0,0 @@
-add_library(
-  _environment OBJECT
-  AngularSeparation.h
-  AngularSeparation.cc
-  BondOrder.h
-  BondOrder.cc
-  LocalBondProjection.h
-  LocalBondProjection.cc
-  LocalDescriptors.h
-  LocalDescriptors.cc
-  MatchEnv.h
-  MatchEnv.cc
-  Registration.h)
-
-target_link_libraries(_environment PUBLIC TBB::tbb)
-
-# We treat the extern folder as a SYSTEM library to avoid getting any diagnostic
-# information from it. In particular, this avoids clang-tidy throwing errors due
-# to any issues in external code.
-target_include_directories(_environment SYSTEM
-                           PUBLIC ${PROJECT_SOURCE_DIR}/extern/)
diff --git a/cpp/locality/CMakeLists.txt b/cpp/locality/CMakeLists.txt
deleted file mode 100644
index 072f84427..000000000
--- a/cpp/locality/CMakeLists.txt
+++ /dev/null
@@ -1,14 +0,0 @@
-set(locality_extension_sources
-    export_BondHistogramCompute.cc export_NeighborQuery.cc
-    export_NeighborList.cc export_Filter.cc export_PeriodicBuffer.cc
-    export_Voronoi.cc)
-
-# create the target and add the needed properties
-nanobind_add_module(_locality module-locality.cc
-                    ${locality_extension_sources})
-target_link_libraries(_locality PUBLIC freud TBB::tbb)
-
-target_set_install_rpath(_locality)
-
-# install
-install(TARGETS _locality DESTINATION freud)
diff --git a/cpp/locality/locality-files.cmake b/cpp/locality/locality-files.cmake
deleted file mode 100644
index d0ab23f40..000000000
--- a/cpp/locality/locality-files.cmake
+++ /dev/null
@@ -1,39 +0,0 @@
-set(VOROPP_SOURCE_DIR "${PROJECT_SOURCE_DIR}/extern/voro++/src")
-
-set(locality_sources
-    locality/AABBQuery.cc
-    locality/FilterRAD.cc
-    locality/FilterSANN.cc
-    locality/LinkCell.cc
-    locality/NeighborComputeFunctional.cc
-    locality/NeighborList.cc
-    locality/PeriodicBuffer.cc
-    locality/Voronoi.cc
-    # Compile voro++ object in directly.
-    ${VOROPP_SOURCE_DIR}/cell.cc
-    ${VOROPP_SOURCE_DIR}/common.cc
-    ${VOROPP_SOURCE_DIR}/container.cc
-    ${VOROPP_SOURCE_DIR}/unitcell.cc
-    ${VOROPP_SOURCE_DIR}/v_compute.cc
-    ${VOROPP_SOURCE_DIR}/c_loops.cc
-    ${VOROPP_SOURCE_DIR}/v_base.cc
-    ${VOROPP_SOURCE_DIR}/wall.cc
-    ${VOROPP_SOURCE_DIR}/pre_container.cc
-    ${VOROPP_SOURCE_DIR}/container_prd.cc)
-
-set(locality_headers
-    locality/AABB.h
-    locality/AABBQuery.h
-    locality/AABBTree.h
-    locality/BondHistogramCompute.h
-    locality/Filter.h
-    locality/FilterRAD.h
-    locality/FilterSANN.h
-    locality/LinkCell.h
-    locality/NeighborBond.h
-    locality/NeighborList.h
-    localty/NeighborPerPointIterator.h
-    locality/NeighborQuery.h
-    locality/PeriodicBuffer.h
-    locality/RawPoints.h
-    locality/Voronoi.h)
diff --git a/cpp/order/CMakeLists.txt b/cpp/order/CMakeLists.txt
deleted file mode 100644
index 540882291..000000000
--- a/cpp/order/CMakeLists.txt
+++ /dev/null
@@ -1,27 +0,0 @@
-add_library(
-  _order OBJECT
-  ContinuousCoordination.h
-  ContinuousCoordination.cc
-  Cubatic.cc
-  Cubatic.h
-  HexaticTranslational.cc
-  HexaticTranslational.h
-  Nematic.cc
-  Nematic.h
-  RotationalAutocorrelation.cc
-  RotationalAutocorrelation.h
-  SolidLiquid.cc
-  SolidLiquid.h
-  Steinhardt.cc
-  Steinhardt.h
-  Wigner3j.cc
-  Wigner3j.h)
-
-target_link_libraries(_order PUBLIC TBB::tbb)
-
-# We treat the extern folder as a SYSTEM library to avoid getting any diagnostic
-# information from it. In particular, this avoids clang-tidy throwing errors due
-# to any issues in external code.
-target_include_directories(_order SYSTEM PUBLIC ${PROJECT_SOURCE_DIR}/extern/)
-
-target_include_directories(_order PUBLIC ${PROJECT_SOURCE_DIR}/cpp/cluster)
diff --git a/cpp/parallel/CMakeLists.txt b/cpp/parallel/CMakeLists.txt
deleted file mode 100644
index bb84c1b94..000000000
--- a/cpp/parallel/CMakeLists.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-nanobind_add_module(_parallel module-parallel.cc)
-target_link_libraries(_parallel PUBLIC freud TBB::tbb)
-
-target_set_install_rpath(_parallel)
-
-# install
-install(TARGETS _parallel DESTINATION freud)
diff --git a/cpp/parallel/parallel-files.cmake b/cpp/parallel/parallel-files.cmake
deleted file mode 100644
index 48386e611..000000000
--- a/cpp/parallel/parallel-files.cmake
+++ /dev/null
@@ -1,2 +0,0 @@
-set(parallel_sources parallel/tbb_config.cc)
-set(parallel_headers parallel/tbb_config.h)
diff --git a/cpp/pmft/CMakeLists.txt b/cpp/pmft/CMakeLists.txt
deleted file mode 100644
index e41a4d613..000000000
--- a/cpp/pmft/CMakeLists.txt
+++ /dev/null
@@ -1,12 +0,0 @@
-nanobind_add_module(
-  _pmft
-  module-pmft.cc
-  export-PMFTXY.cc
-  export-PMFTXYZ.cc
-  export-PMFTR12.cc
-  export-PMFTXYT.cc)
-target_link_libraries(_pmft PUBLIC freud)
-
-target_set_install_rpath(_pmft)
-
-install(TARGETS _pmft DESTINATION freud)
diff --git a/cpp/pmft/pmft-files.cmake b/cpp/pmft/pmft-files.cmake
deleted file mode 100644
index c579a8627..000000000
--- a/cpp/pmft/pmft-files.cmake
+++ /dev/null
@@ -1,4 +0,0 @@
-set(pmft_sources pmft/PMFTXY.cc pmft/PMFTXYZ.cc pmft/PMFTR12.cc pmft/PMFTXYT.cc)
-
-set(pmft_headers pmft/PMFT.h pmft/PMFTXY.h pmft/PMFTXYZ.h pmft/PMFTR12.h
-                 pmft/PMFTXYT.h)
diff --git a/cpp/util/CMakeLists.txt b/cpp/util/CMakeLists.txt
deleted file mode 100644
index 9d0991e0c..000000000
--- a/cpp/util/CMakeLists.txt
+++ /dev/null
@@ -1,10 +0,0 @@
-set(util_extension_headers export_ManagedArray.h export_Vector.h)
-
-nanobind_add_module(_util module-util.cc
-                    ${util_extension_headers})
-target_link_libraries(_util PUBLIC freud)
-
-target_set_install_rpath(_util)
-
-# install
-install(TARGETS _util DESTINATION freud)
diff --git a/cpp/util/util-files.cmake b/cpp/util/util-files.cmake
deleted file mode 100644
index 03c9b4dac..000000000
--- a/cpp/util/util-files.cmake
+++ /dev/null
@@ -1,10 +0,0 @@
-set(util_sources util/diagonalize.cc)
-
-set(util_headers
-    util/BiMap.h
-    util/Histogram.h
-    util/ManagedArray.h
-    util/ThreadStorage.h
-    util/VectorMath.h
-    util/utils.h
-    util/diagonalize.h)
diff --git a/freud/CMakeLists.txt b/freud/CMakeLists.txt
index a32c68196..5c17db16e 100644
--- a/freud/CMakeLists.txt
+++ b/freud/CMakeLists.txt
@@ -1,3 +1,214 @@
+###############
+# C++ component
+
+# set the rpath for installing python extension modules
+function(target_set_install_rpath _target)
+  if(_using_conda)
+    set_target_properties(${_target} PROPERTIES INSTALL_RPATH_USE_LINK_PATH
+                                                True)
+  endif()
+endfunction()
+
+set(VOROPP_SOURCE_DIR "${PROJECT_SOURCE_DIR}/extern/voro++/src")
+
+# Use a static library for the main code. A Dynamic library would be more
+# disk space efficient, but I was unable to resolve a RPATH issue where
+# any use of `INSTALL_RPATH` would result in "terminated by signal SIGKILL"
+# the moment Python attempts to load the library.
+add_library(freud STATIC
+    # box
+    box/Box.h
+
+    # cluster
+    # cluster/Cluster.h
+    # cluster/Cluster.cc
+    # cluster/ClusterProperties.h
+    # cluster/ClusterProperties.cc
+
+    # density
+    # density/CorrelationFunction.h
+    # density/CorrelationFunction.cc
+    # density/GaussianDensity.h
+    # density/GaussianDensity.cc
+    # density/LocalDensity.h
+    # density/LocalDensity.cc
+    # density/RDF.h
+    # density/RDF.cc
+    # density/SphereVoxelization.h
+    # density/SphereVoxelization.cc
+
+    # diffraction
+    # diffraction/StaticStructureFactor.h
+    # diffraction/StaticStructureFactor.cc
+    # diffraction/StaticStructureFactorDebye.h
+    # diffraction/StaticStructureFactorDebye.cc
+    # diffraction/StaticStructureFactorDirect.h
+    # diffraction/StaticStructureFactorDirect.cc
+
+    # environment
+    # environment/AngularSeparation.h
+    # environment/AngularSeparation.cc
+    # environment/BondOrder.h
+    # environment/BondOrder.cc
+    # environment/LocalBondProjection.h
+    # environment/LocalBondProjection.cc
+    # environment/LocalDescriptors.h
+    # environment/LocalDescriptors.cc
+    # environment/MatchEnv.h
+    # environment/MatchEnv.cc
+    # environment/Registration.h
+
+    # locality
+    locality/AABB.h
+    locality/AABBQuery.cc
+    locality/AABBQuery.h
+    locality/AABBTree.h
+    locality/BondHistogramCompute.h
+    locality/Filter.h
+    locality/FilterRAD.h
+    locality/FilterRAD.cc
+    locality/FilterSANN.h
+    locality/FilterSANN.cc
+    locality/LinkCell.h
+    locality/LinkCell.cc
+    locality/NeighborBond.h
+    locality/NeighborList.h
+    locality/NeighborPerPointIterator.h
+    locality/NeighborComputeFunctional.cc
+    locality/NeighborList.cc
+    locality/NeighborQuery.h
+    locality/PeriodicBuffer.h
+    locality/PeriodicBuffer.cc
+    locality/RawPoints.h
+    locality/Voronoi.h
+    locality/Voronoi.cc
+    # Compile voro++ object in directly.
+    ${VOROPP_SOURCE_DIR}/cell.cc
+    ${VOROPP_SOURCE_DIR}/common.cc
+    ${VOROPP_SOURCE_DIR}/container.cc
+    ${VOROPP_SOURCE_DIR}/unitcell.cc
+    ${VOROPP_SOURCE_DIR}/v_compute.cc
+    ${VOROPP_SOURCE_DIR}/c_loops.cc
+    ${VOROPP_SOURCE_DIR}/v_base.cc
+    ${VOROPP_SOURCE_DIR}/wall.cc
+    ${VOROPP_SOURCE_DIR}/pre_container.cc
+    ${VOROPP_SOURCE_DIR}/container_prd.cc
+
+    # order
+    # order/ContinuousCoordination.h
+    # order/ContinuousCoordination.cc
+    # order/Cubatic.cc
+    # order/Cubatic.h
+    # order/HexaticTranslational.cc
+    # order/HexaticTranslational.h
+    # order/Nematic.cc
+    # order/Nematic.h
+    # order/RotationalAutocorrelation.cc
+    # order/RotationalAutocorrelation.h
+    # order/SolidLiquid.cc
+    # order/SolidLiquid.h
+    # order/Steinhardt.cc
+    # order/Steinhardt.h
+    # order/Wigner3j.cc
+    # order/Wigner3j.h
+    
+    # parallel
+    parallel/tbb_config.h    
+    parallel/tbb_config.cc  
+
+    # pmft
+    pmft/PMFT.h
+    pmft/PMFTXY.h
+    pmft/PMFTXYZ.h
+    pmft/PMFTR12.h
+    pmft/PMFTXYT.h
+    pmft/PMFTXY.cc
+    pmft/PMFTXYZ.cc
+    pmft/PMFTR12.cc
+    pmft/PMFTXYT.cc
+
+    # util
+    util/BiMap.h
+    util/Histogram.h
+    util/ManagedArray.h
+    util/ThreadStorage.h
+    util/VectorMath.h
+    util/utils.h
+    util/diagonalize.h
+    util/diagonalize.cc
+)
+
+set_target_properties(freud PROPERTIES POSITION_INDEPENDENT_CODE ON)
+target_link_libraries(freud PUBLIC TBB::tbb)
+target_include_directories(freud SYSTEM PUBLIC ${PROJECT_SOURCE_DIR}/extern/)
+
+# cluster
+# nanobind_add_module(_cluster cluster/...)
+# target_link_libraries(_cluster PUBLIC freud TBB::tbb)
+# target_set_install_rpath(_cluster)
+
+# density
+# nanobind_add_module(_density density/...)
+# target_link_libraries(_density PUBLIC freud TBB::tbb)
+# target_set_install_rpath(_density)
+
+# diffraction
+# nanobind_add_module(_diffraction diffraction/...)
+# target_link_libraries(_diffraction PUBLIC freud TBB::tbb)
+# target_set_install_rpath(_diffraction)
+
+# environment
+# nanobind_add_module(_environment environment/...)
+# target_link_libraries(_environment PUBLIC freud TBB::tbb)
+# target_set_install_rpath(_environment)
+
+# box
+nanobind_add_module(_box box/module-box.cc box/export_Box.cc)
+target_link_libraries(_box PUBLIC TBB::tbb)
+target_set_install_rpath(_box)
+
+# locality
+nanobind_add_module(_locality locality/module-locality.cc
+                        locality/export_BondHistogramCompute.cc
+                        locality/export_NeighborQuery.cc
+                        locality/export_NeighborList.cc
+                        locality/export_Filter.cc
+                        locality/export_PeriodicBuffer.cc
+    locality/export_Voronoi.cc
+    )
+target_link_libraries(_locality PUBLIC freud TBB::tbb)
+target_set_install_rpath(_locality)
+
+# order
+# nanobind_add_module(_order order/...)
+# target_link_libraries(_order PUBLIC freud TBB::tbb)
+# target_set_install_rpath(_order)
+
+# parallel
+nanobind_add_module(_parallel parallel/module-parallel.cc)
+target_link_libraries(_parallel PUBLIC freud TBB::tbb)
+target_set_install_rpath(_parallel)
+
+# pmft
+nanobind_add_module(
+  _pmft
+  pmft/module-pmft.cc
+  pmft/export-PMFTXY.cc
+  pmft/export-PMFTXYZ.cc
+  pmft/export-PMFTR12.cc
+  pmft/export-PMFTXYT.cc)
+target_link_libraries(_pmft PUBLIC freud)
+target_set_install_rpath(_pmft)
+
+# util
+nanobind_add_module(_util util/module-util.cc 
+    util/export_ManagedArray.h
+    util/export_Vector.h)
+target_link_libraries(_util PUBLIC freud)
+target_set_install_rpath(_util)
+
+################
+# Python module
 set(python_files
     __init__.py
     box.py
@@ -8,6 +219,19 @@ set(python_files
     pmft.py
     plot.py
     util.py)
-# cluster.py density.py diffraction.py environment.py order.py)
+# cluster.py density.py diffraction.py environment.py order.py interface.py msd.py)
 
+# install
+if (SKBUILD)
 install(FILES ${python_files} DESTINATION freud)
+install(TARGETS _box DESTINATION freud)
+#install(TARGETS _cluster DESTINATION freud)
+#install(TARGETS _density DESTINATION freud)
+#install(TARGETS _diffraction DESTINATION freud)
+#install(TARGETS _environment DESTINATION freud)
+install(TARGETS _locality DESTINATION freud)
+#install(TARGETS _order DESTINATION freud)
+install(TARGETS _parallel DESTINATION freud)
+install(TARGETS _pmft DESTINATION freud)
+install(TARGETS _util DESTINATION freud)
+endif()
diff --git a/cpp/box/Box.h b/freud/box/Box.h
similarity index 100%
rename from cpp/box/Box.h
rename to freud/box/Box.h
diff --git a/cpp/box/export_Box.cc b/freud/box/export_Box.cc
similarity index 100%
rename from cpp/box/export_Box.cc
rename to freud/box/export_Box.cc
diff --git a/cpp/box/export_Box.h b/freud/box/export_Box.h
similarity index 100%
rename from cpp/box/export_Box.h
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