From 169042cc720fb3ea2324c271a5cc2e5f7f7fd98f Mon Sep 17 00:00:00 2001 From: CIRCLECI Date: Fri, 18 Dec 2020 23:22:22 +0000 Subject: [PATCH] New conda index for the ggd-genomics channel. (2020-12-18T23:22:22.131075) --- channeldata/genomics/channeldata.json | 236 ++++++++++++++++++++++++++ channeldata/genomics/index.html | 30 +++- 2 files changed, 265 insertions(+), 1 deletion(-) diff --git a/channeldata/genomics/channeldata.json b/channeldata/genomics/channeldata.json index 6d3e69e..1e1b6fd 100644 --- a/channeldata/genomics/channeldata.json +++ b/channeldata/genomics/channeldata.json @@ -4707,6 +4707,65 @@ "timestamp": 1588051241, "version": "1" }, + "grch37-self-chain-high-identity-ucsc-v1": { + "activate.d": false, + "binary_prefix": false, + "deactivate.d": false, + "description": null, + "dev_url": null, + "doc_source_url": null, + "doc_url": null, + "home": null, + "icon_hash": null, + "icon_url": null, + "identifiers": { + "genome-build": "GRCh37", + "species": "Homo_sapiens" + }, + "keywords": [ + "Self-Chain", + "Self-Alignment", + "Repeats", + "low-copy-repeats", + "High-Identity", + ">=90%-Identity" + ], + "license": null, + "post_link": true, + "pre_link": false, + "pre_unlink": false, + "recipe_origin": null, + "run_exports": {}, + "source_git_url": null, + "source_url": null, + "subdirs": [ + "noarch" + ], + "summary": "High identity, >=90%, Self chain alignments of the human genome with an improved gap scoring system. Genomic coordinates are merged across all overlapping intervals, providing continuous high identity self chain repeat regions. Alignments point out areas of duplication within the human genome, with the exception of the pseudoautosomal regions on X and Y. From the Human Chained Self Alignemnts track on UCSC. Remapped from UCSC hg19 to Ensembl GRCh37", + "tags": { + "cached": [ + "uploaded_to_aws" + ], + "data-provider": "UCSC", + "data-version": "27-Apr-2009", + "file-type": [ + "bed" + ], + "final-file-sizes": { + "grch37-self-chain-high-identity-ucsc-v1.bed.gz": "52.37K", + "grch37-self-chain-high-identity-ucsc-v1.bed.gz.tbi": "40.70K" + }, + "final-files": [ + "grch37-self-chain-high-identity-ucsc-v1.bed.gz", + "grch37-self-chain-high-identity-ucsc-v1.bed.gz.tbi" + ], + "genomic-coordinate-base": "0-based-inclusive", + "ggd-channel": "genomics" + }, + "text_prefix": false, + "timestamp": 1608333212, + "version": "1" + }, "grch37-self-chain-ucsc-v1": { "activate.d": false, "binary_prefix": false, @@ -10068,6 +10127,65 @@ "timestamp": 1588051189, "version": "1" }, + "grch38-self-chain-high-identity-ucsc-v1": { + "activate.d": false, + "binary_prefix": false, + "deactivate.d": false, + "description": null, + "dev_url": null, + "doc_source_url": null, + "doc_url": null, + "home": null, + "icon_hash": null, + "icon_url": null, + "identifiers": { + "genome-build": "GRCh38", + "species": "Homo_sapiens" + }, + "keywords": [ + "Self-Chain", + "Self-Alignment", + "Repeats", + "low-copy-repeats", + "High-Identity", + ">=90%-Identity" + ], + "license": null, + "post_link": true, + "pre_link": false, + "pre_unlink": false, + "recipe_origin": null, + "run_exports": {}, + "source_git_url": null, + "source_url": null, + "subdirs": [ + "noarch" + ], + "summary": "High identity, >=90%, Self chain alignments of the human genome with an improved gap scoring system. Genomic coordinates are merged across all overlapping intervals, providing continuous high identity self chain repeat regions. Alignments point out areas of duplication within the human genome, with the exception of the pseudoautosomal regions on X and Y. From the Human Chained Self Alignemnts track on UCSC. Remapped from UCSC hg38 to Ensembl GRCh37", + "tags": { + "cached": [ + "uploaded_to_aws" + ], + "data-provider": "UCSC", + "data-version": "06-Mar-2014", + "file-type": [ + "bed" + ], + "final-file-sizes": { + "grch38-self-chain-high-identity-ucsc-v1.bed.gz": "61.66K", + "grch38-self-chain-high-identity-ucsc-v1.bed.gz.tbi": "52.74K" + }, + "final-files": [ + "grch38-self-chain-high-identity-ucsc-v1.bed.gz", + "grch38-self-chain-high-identity-ucsc-v1.bed.gz.tbi" + ], + "genomic-coordinate-base": "0-based-inclusive", + "ggd-channel": "genomics" + }, + "text_prefix": false, + "timestamp": 1608333245, + "version": "1" + }, "grch38-self-chain-ucsc-v1": { "activate.d": false, "binary_prefix": false, @@ -15208,6 +15326,65 @@ "timestamp": 1588051215, "version": "1" }, + "hg19-self-chain-high-identity-ucsc-v1": { + "activate.d": false, + "binary_prefix": false, + "deactivate.d": false, + "description": null, + "dev_url": null, + "doc_source_url": null, + "doc_url": null, + "home": null, + "icon_hash": null, + "icon_url": null, + "identifiers": { + "genome-build": "hg19", + "species": "Homo_sapiens" + }, + "keywords": [ + "Self-Chain", + "Self-Alignment", + "Repeats", + "low-copy-repeats", + "High-Identity", + ">=90%-Identity" + ], + "license": null, + "post_link": true, + "pre_link": false, + "pre_unlink": false, + "recipe_origin": null, + "run_exports": {}, + "source_git_url": null, + "source_url": null, + "subdirs": [ + "noarch" + ], + "summary": "High identity, >=90%, Self chain alignments of the human genome with an improved gap scoring system. Genomic coordinates are merged across all overlapping intervals, providing continuous high identity self chain repeat regions. Alignments point out areas of duplication within the human genome, with the exception of the pseudoautosomal regions on X and Y. From the Human Chained Self Alignments track on UCSC.", + "tags": { + "cached": [ + "uploaded_to_aws" + ], + "data-provider": "UCSC", + "data-version": "27-Apr-2009", + "file-type": [ + "bed" + ], + "final-file-sizes": { + "hg19-self-chain-high-identity-ucsc-v1.bed.gz": "54.73K", + "hg19-self-chain-high-identity-ucsc-v1.bed.gz.tbi": "40.85K" + }, + "final-files": [ + "hg19-self-chain-high-identity-ucsc-v1.bed.gz", + "hg19-self-chain-high-identity-ucsc-v1.bed.gz.tbi" + ], + "genomic-coordinate-base": "0-based-inclusive", + "ggd-channel": "genomics" + }, + "text_prefix": false, + "timestamp": 1608333309, + "version": "1" + }, "hg19-self-chain-ucsc-v1": { "activate.d": false, "binary_prefix": false, @@ -20223,6 +20400,65 @@ "timestamp": 1588051162, "version": "1" }, + "hg38-self-chain-high-identity-ucsc-v1": { + "activate.d": false, + "binary_prefix": false, + "deactivate.d": false, + "description": null, + "dev_url": null, + "doc_source_url": null, + "doc_url": null, + "home": null, + "icon_hash": null, + "icon_url": null, + "identifiers": { + "genome-build": "hg38", + "species": "Homo_sapiens" + }, + "keywords": [ + "Self-Chain", + "Self-Alignment", + "Repeats", + "low-copy-repeats", + "High-Identity", + ">=90%-Identity" + ], + "license": null, + "post_link": true, + "pre_link": false, + "pre_unlink": false, + "recipe_origin": null, + "run_exports": {}, + "source_git_url": null, + "source_url": null, + "subdirs": [ + "noarch" + ], + "summary": "High identity, >=90%, Self chain alignments of the human genome with an improved gap scoring system. Genomic coordinates are merged across all overlapping intervals, providing continuous high identity self chain repeat regions. Alignments point out areas of duplication within the human genome, with the exception of the pseudoautosomal regions on X and Y. From the Human Chained Self Alignemnts track on UCSC.", + "tags": { + "cached": [ + "uploaded_to_aws" + ], + "data-provider": "UCSC", + "data-version": "06-Mar-2014", + "file-type": [ + "bed" + ], + "final-file-sizes": { + "hg38-self-chain-high-identity-ucsc-v1.bed.gz": "64.21K", + "hg38-self-chain-high-identity-ucsc-v1.bed.gz.tbi": "52.58K" + }, + "final-files": [ + "hg38-self-chain-high-identity-ucsc-v1.bed.gz", + "hg38-self-chain-high-identity-ucsc-v1.bed.gz.tbi" + ], + "genomic-coordinate-base": "0-based-inclusive", + "ggd-channel": "genomics" + }, + "text_prefix": false, + "timestamp": 1608333277, + "version": "1" + }, "hg38-self-chain-ucsc-v1": { "activate.d": false, "binary_prefix": false, diff --git a/channeldata/genomics/index.html b/channeldata/genomics/index.html index 29813f3..f1d7127 100644 --- a/channeldata/genomics/index.html +++ b/channeldata/genomics/index.html @@ -644,6 +644,13 @@

RSS Feed   c X Segmental duplications (SuperDups) File from UCSC. That is,... + + grch37-self-chain-high-identity-ucsc-v1 + 1 + + + +X High identity, >=90%, Self chain alignments of the human genome with... grch37-self-chain-ucsc-v1 1 @@ -1274,6 +1281,13 @@

RSS Feed   c X Segmental duplications (SuperDups) File from UCSC. That is,... + + grch38-self-chain-high-identity-ucsc-v1 + 1 + + + +X High identity, >=90%, Self chain alignments of the human genome with... grch38-self-chain-ucsc-v1 1 @@ -1883,6 +1897,13 @@

RSS Feed   c X The hg19 segmental duplications (SuperDups) File from UCSC. That is,... + + hg19-self-chain-high-identity-ucsc-v1 + 1 + + + +X High identity, >=90%, Self chain alignments of the human genome with... hg19-self-chain-ucsc-v1 1 @@ -2471,6 +2492,13 @@

RSS Feed   c X Segmental duplications (SuperDups) File from UCSC. That is,... + + hg38-self-chain-high-identity-ucsc-v1 + 1 + + + +X High identity, >=90%, Self chain alignments of the human genome with... hg38-self-chain-ucsc-v1 1 @@ -2591,6 +2619,6 @@

RSS Feed   c X Reference genome for mouse from UCSC -
Updated: 2020-12-15 07:26:06 +0000 - Files: 359
+
Updated: 2020-12-18 23:22:20 +0000 - Files: 363
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