validate called SNP/InDel

[DayTimeMouse]

Hi,

How can I further validate called SNP/InDel besides using IGV, especially when the number of SNP variants may be in the thousands? Could you give me some ideas?

Best regards.

[pichuan]

Hi @DayTimeMouse , this question might be out of the DeepSomatic support scope.
It'll depend on your situation.
For example: If it's a sample that you could potentially sequence with different technologies, that can help you get more insights on whether the variants you're looking at is real or not.