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grateful-refs.bib
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@Manual{jsPsychMaker,
title = {{jsPsychMaker}: Create behavioral experiments and surveys using jsPsych and R},
author = {Gorka Navarrete and Herman Valencia},
year = {2024},
note = {R package version 0.3.5.901, commit d0cb29fd2ee7bae3b25a0f5395c80a8141d85828},
url = {https://github.com/gorkang/jsPsychMaker},
}
@Manual{jsPsychHelpeR,
title = {{jsPsychHelpeR}: Standardize and automatize data preparation and analysis of
jsPsych experiments created with jsPsychMaker},
author = {Gorka Navarrete},
year = {2024},
note = {R package version 0.3.5.906},
url = {https://github.com/gorkang/jsPsychHelpeR},
}
@Manual{jsPsychMonkeys,
title = {{jsPsychMonkeys}: Release monkeys to a jsPsych experiment using the R package
{targets}, docker and {RSelenium}},
author = {Gorka Navarrete},
year = {2024},
note = {R package version 0.3.5.902, commit af525ed97a2d512bdcecb374b78a9d7dc3494096},
url = {https://github.com/gorkang/jsPsychMonkeys},
}
@Manual{pkgdown,
title = {{pkgdown}: Make Static HTML Documentation for a Package},
author = {Hadley Wickham and Jay Hesselberth and Maëlle Salmon and Olivier Roy and Salim Brüggemann},
year = {2024},
note = {R package version 2.1.1, https://github.com/r-lib/pkgdown},
url = {https://pkgdown.r-lib.org/},
}
@Manual{purrr,
title = {{purrr}: Functional Programming Tools},
author = {Hadley Wickham and Lionel Henry},
year = {2023},
note = {R package version 1.0.2, https://github.com/tidyverse/purrr},
url = {https://purrr.tidyverse.org/},
}
@Manual{tarchetypes,
title = {{tarchetypes}: Archetypes for Targets},
author = {William Michael Landau},
year = {2021},
note = {{https://docs.ropensci.org/tarchetypes/, https://github.com/ropensci/tarchetypes}},
}
@Article{targets,
title = {The targets R package: a dynamic Make-like function-oriented pipeline toolkit for reproducibility and high-performance computing},
author = {William Michael Landau},
journal = {Journal of Open Source Software},
year = {2021},
volume = {6},
number = {57},
pages = {2959},
url = {https://doi.org/10.21105/joss.02959},
}
@Manual{cli,
title = {{cli}: Helpers for Developing Command Line Interfaces},
author = {Gábor Csárdi},
year = {2024},
note = {R package version 3.6.3, https://github.com/r-lib/cli},
url = {https://cli.r-lib.org},
}
@Manual{dplyr,
title = {{dplyr}: A Grammar of Data Manipulation},
author = {Hadley Wickham and Romain François and Lionel Henry and Kirill Müller and Davis Vaughan},
year = {2023},
note = {R package version 1.1.4, https://github.com/tidyverse/dplyr},
url = {https://dplyr.tidyverse.org},
}
@Manual{DT,
title = {{DT}: A Wrapper of the JavaScript Library `{DataTables}'},
author = {Yihui Xie and Joe Cheng and Xianying Tan},
year = {2024},
note = {R package version 0.33},
url = {https://github.com/rstudio/DT},
}
@Manual{forcats,
title = {{forcats}: Tools for Working with Categorical Variables (Factors)},
author = {Hadley Wickham},
year = {2023},
note = {R package version 1.0.0,
https://github.com/tidyverse/forcats},
url = {https://forcats.tidyverse.org/},
}
@Book{ggplot2,
author = {Hadley Wickham},
title = {ggplot2: Elegant Graphics for Data Analysis},
publisher = {Springer-Verlag New York},
year = {2016},
isbn = {978-3-319-24277-4},
url = {https://ggplot2.tidyverse.org},
}
@Article{gtsummary,
author = {Daniel D. Sjoberg and Karissa Whiting and Michael Curry and Jessica A. Lavery and Joseph Larmarange},
title = {Reproducible Summary Tables with the gtsummary Package},
journal = {{The R Journal}},
year = {2021},
url = {https://doi.org/10.32614/RJ-2021-053},
doi = {10.32614/RJ-2021-053},
volume = {13},
issue = {1},
pages = {570-580},
}
@Manual{here,
title = {{here}: A Simpler Way to Find Your Files},
author = {Kirill Müller},
year = {2020},
note = {R package version 1.0.1},
url = {https://CRAN.R-project.org/package=here},
}
@Manual{janitor,
title = {{janitor}: Simple Tools for Examining and Cleaning Dirty Data},
author = {Sam Firke},
year = {2023},
note = {R package version 2.2.0,
https://sfirke.github.io/janitor/},
url = {https://github.com/sfirke/janitor},
}
@Manual{patchwork,
title = {{patchwork}: The Composer of Plots},
author = {Thomas Lin Pedersen},
year = {2024},
note = {R package version 1.3.0,
https://github.com/thomasp85/patchwork},
url = {https://patchwork.data-imaginist.com},
}
@Manual{psych,
title = {{psych}: Procedures for Psychological, Psychometric, and Personality Research},
author = {{William Revelle}},
organization = {Northwestern University},
address = {Evanston, Illinois},
year = {2024},
note = {R package version 2.4.6},
url = {https://CRAN.R-project.org/package=psych},
}
@Manual{readr,
title = {{readr}: Read Rectangular Text Data},
author = {Hadley Wickham and Jim Hester and Jennifer Bryan},
year = {2024},
note = {R package version 2.1.5, https://github.com/tidyverse/readr},
url = {https://readr.tidyverse.org},
}
@Manual{renv,
title = {{renv}: Project Environments},
author = {Kevin Ushey and Hadley Wickham},
year = {2024},
note = {R package version 1.0.11, https://github.com/rstudio/renv},
url = {https://rstudio.github.io/renv/},
}
@Manual{rmarkdown2024,
title = {{rmarkdown}: Dynamic Documents for R},
author = {JJ Allaire and Yihui Xie and Christophe Dervieux and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
year = {2024},
note = {R package version 2.29},
url = {https://github.com/rstudio/rmarkdown},
}
@Book{rmarkdown2018,
title = {R Markdown: The Definitive Guide},
author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
publisher = {Chapman and Hall/CRC},
address = {Boca Raton, Florida},
year = {2018},
isbn = {9781138359338},
url = {https://bookdown.org/yihui/rmarkdown},
}
@Book{rmarkdown2020,
title = {R Markdown Cookbook},
author = {Yihui Xie and Christophe Dervieux and Emily Riederer},
publisher = {Chapman and Hall/CRC},
address = {Boca Raton, Florida},
year = {2020},
isbn = {9780367563837},
url = {https://bookdown.org/yihui/rmarkdown-cookbook},
}
@Manual{rstudioapi,
title = {{rstudioapi}: Safely Access the RStudio API},
author = {Kevin Ushey and JJ Allaire and Hadley Wickham and Gary Ritchie},
year = {2024},
note = {R package version 0.17.1,
https://github.com/rstudio/rstudioapi},
url = {https://rstudio.github.io/rstudioapi/},
}
@Manual{stringr,
title = {{stringr}: Simple, Consistent Wrappers for Common String Operations},
author = {Hadley Wickham},
year = {2023},
note = {R package version 1.5.1},
url = {https://CRAN.R-project.org/package=stringr},
}
@Article{testthat,
author = {Hadley Wickham},
title = {{testthat}: Get Started with Testing},
journal = {The R Journal},
year = {2011},
volume = {3},
pages = {5--10},
url = {https://journal.r-project.org/archive/2011-1/RJournal_2011-1_Wickham.pdf},
}
@Manual{tibble,
title = {{tibble}: Simple Data Frames},
author = {Kirill Müller and Hadley Wickham},
year = {2023},
note = {R package version 3.2.1},
url = {https://CRAN.R-project.org/package=tibble},
}
@Manual{tidyr,
title = {{tidyr}: Tidy Messy Data},
author = {Hadley Wickham and Davis Vaughan and Maximilian Girlich},
year = {2024},
note = {R package version 1.3.1, https://github.com/tidyverse/tidyr},
url = {https://tidyr.tidyverse.org},
}
@Manual{visNetwork,
title = {{visNetwork}: Network Visualization using `{vis.js}' Library},
author = {{Almende B.V. and Contributors} and Benoit Thieurmel},
year = {2022},
note = {R package version 2.1.2},
url = {https://datastorm-open.github.io/visNetwork/},
}
@Manual{covr,
title = {{covr}: Test Coverage for Packages},
author = {Jim Hester},
year = {2023},
note = {R package version 3.6.4, https://github.com/r-lib/covr},
url = {https://covr.r-lib.org},
}
@Manual{devtools,
title = {{devtools}: Tools to Make Developing R Packages Easier},
author = {Hadley Wickham and Jim Hester and Winston Chang and Jennifer Bryan},
year = {2022},
note = {R package version 2.4.5, https://github.com/r-lib/devtools},
url = {https://devtools.r-lib.org/},
}
@Manual{jsPsychAdmin,
title = {{jsPsychAdmin}: Admin tasks for jsPsychR packages},
author = {Gorka Navarrete},
year = {2024},
note = {R package version 0.3.5.903},
url = {https://github.com/gorkang/jsPsychAdmin},
}
@Manual{jsPsychHelpeR,
title = {{jsPsychHelpeR}: Standardize and automatize data preparation and analysis of
jsPsych experiments created with jsPsychMaker},
author = {Gorka Navarrete},
year = {2024},
note = {R package version 0.3.5.906},
url = {https://github.com/gorkang/jsPsychHelpeR},
}
@Manual{pak,
title = {{pak}: Another Approach to Package Installation},
author = {Gábor Csárdi and Jim Hester},
year = {2024},
note = {R package version 0.8.0, https://github.com/r-lib/pak},
url = {https://pak.r-lib.org/},
}
@Manual{utils,
title = {{R}: A Language and Environment for Statistical Computing},
author = {{R Core Team}},
organization = {R Foundation for Statistical Computing},
address = {Vienna, Austria},
year = {2024},
url = {https://www.R-project.org/},
}
@Manual{jsPsychMaker,
title = {{jsPsychMaker}: Create behavioral experiments and surveys using jsPsych and R},
author = {Gorka Navarrete and Herman Valencia},
year = {2024},
note = {R package version 0.3.5.901, commit d0cb29fd2ee7bae3b25a0f5395c80a8141d85828},
url = {https://github.com/gorkang/jsPsychMaker},
}
@Manual{tools,
title = {{R}: A Language and Environment for Statistical Computing},
author = {{R Core Team}},
organization = {R Foundation for Statistical Computing},
address = {Vienna, Austria},
year = {2024},
url = {https://www.R-project.org/},
}
@Manual{callr,
title = {{callr}: Call R from R},
author = {Gábor Csárdi and Winston Chang},
year = {2024},
note = {R package version 3.7.6, https://github.com/r-lib/callr},
url = {https://callr.r-lib.org},
}
@Manual{datatable,
title = {{data.table}: Extension of `{data.frame}'},
author = {Tyson Barrett and Matt Dowle and Arun Srinivasan and Jan Gorecki and Michael Chirico and Toby Hocking and Benjamin Schwendinger},
year = {2024},
note = {R package version 1.16.2, https://Rdatatable.gitlab.io/data.table,
https://github.com/Rdatatable/data.table},
url = {https://r-datatable.com},
}
@Manual{glue,
title = {{glue}: Interpreted String Literals},
author = {Jim Hester and Jennifer Bryan},
year = {2024},
note = {R package version 1.8.0, https://github.com/tidyverse/glue},
url = {https://glue.tidyverse.org/},
}
@Manual{googlesheets4,
title = {googlesheets4: Access Google Sheets using the Sheets API V4},
author = {Jennifer Bryan},
year = {2023},
note = {R package version 1.1.1},
url = {https://CRAN.R-project.org/package=googlesheets4},
}
@Manual{gtools,
title = {{gtools}: Various R Programming Tools},
author = {Gregory R. Warnes and Ben Bolker and Thomas Lumley and Arni Magnusson and Bill Venables and Genei Ryodan and Steffen Moeller},
year = {2023},
note = {R package version 3.9.5},
url = {https://github.com/r-gregmisc/gtools},
}
@Manual{magrittr,
title = {{magrittr}: A Forward-Pipe Operator for R},
author = {Stefan Milton Bache and Hadley Wickham},
year = {2022},
note = {R package version 2.0.3},
url = {https://CRAN.R-project.org/package=magrittr},
}
@Manual{readxl,
title = {{readxl}: Read Excel Files},
author = {Hadley Wickham and Jennifer Bryan},
year = {2023},
note = {R package version 1.4.3, https://github.com/tidyverse/readxl},
url = {https://readxl.tidyverse.org},
}
@Manual{rlang,
title = {{rlang}: Functions for Base Types and Core R and `{Tidyverse}' Features},
author = {Lionel Henry and Hadley Wickham},
year = {2024},
note = {R package version 1.1.4, https://github.com/r-lib/rlang},
url = {https://rlang.r-lib.org},
}
@Manual{skimr,
title = {{skimr}: Compact and Flexible Summaries of Data},
author = {Elin Waring and Michael Quinn and Amelia McNamara and Eduardo {Arino de la Rubia} and Hao Zhu and Shannon Ellis},
year = {2022},
note = {R package version 2.1.5,
https://github.com/ropensci/skimr/},
url = {https://docs.ropensci.org/skimr/ (website)},
}
@Article{stringi,
title = {{stringi}: {F}ast and portable character string processing in {R}},
author = {Marek Gagolewski},
journal = {Journal of Statistical Software},
year = {2022},
volume = {103},
number = {2},
pages = {1--59},
doi = {10.18637/jss.v103.i02},
}
@Manual{stats,
title = {{R}: A Language and Environment for Statistical Computing},
author = {{R Core Team}},
organization = {R Foundation for Statistical Computing},
address = {Vienna, Austria},
year = {2024},
url = {https://www.R-project.org/},
}
@Manual{writexl,
title = {{writexl}: Export Data Frames to Excel `{xlsx}' Format},
author = {Jeroen Ooms},
year = {2024},
note = {R package version 1.5.1},
url = {https://ropensci.r-universe.dev/writexl
https://docs.ropensci.org/writexl/},
}
@Manual{ggridges,
title = {{ggridges}: Ridgeline Plots in `{ggplot2}'},
author = {Claus O. Wilke},
year = {2024},
note = {R package version 0.5.6},
url = {https://wilkelab.org/ggridges/},
}
@Manual{shiny,
title = {{shiny}: Web Application Framework for R},
author = {Winston Chang and Joe Cheng and JJ Allaire and Carson Sievert and Barret Schloerke and Yihui Xie and Jeff Allen and Jonathan McPherson and Alan Dipert and Barbara Borges},
year = {2024},
note = {R package version 1.9.1, https://github.com/rstudio/shiny},
url = {https://shiny.posit.co/},
}
@Manual{knitr2024,
title = {{knitr}: A General-Purpose Package for Dynamic Report Generation in R},
author = {Yihui Xie},
year = {2024},
note = {R package version 1.49},
url = {https://yihui.org/knitr/},
}
@Book{knitr2015,
title = {Dynamic Documents with {R} and knitr},
author = {Yihui Xie},
publisher = {Chapman and Hall/CRC},
address = {Boca Raton, Florida},
year = {2015},
edition = {2nd},
note = {ISBN 978-1498716963},
url = {https://yihui.org/knitr/},
}
@InCollection{knitr2014,
booktitle = {Implementing Reproducible Computational Research},
editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
title = {{knitr}: A Comprehensive Tool for Reproducible Research in {R}},
author = {Yihui Xie},
publisher = {Chapman and Hall/CRC},
year = {2014},
note = {ISBN 978-1466561595},
}
@Manual{usethis,
title = {{usethis}: Automate Package and Project Setup},
author = {Hadley Wickham and Jennifer Bryan and Malcolm Barrett and Andy Teucher},
year = {2024},
note = {R package version 3.0.0, https://github.com/r-lib/usethis},
url = {https://usethis.r-lib.org},
}
@Manual{rvest,
title = {{rvest}: Easily Harvest (Scrape) Web Pages},
author = {Hadley Wickham},
year = {2024},
note = {R package version 1.0.4, https://github.com/tidyverse/rvest},
url = {https://rvest.tidyverse.org/},
}
@Manual{V8,
title = {V8: Embedded JavaScript and WebAssembly Engine for R},
author = {Jeroen Ooms},
year = {2024},
note = {R package version 6.0.0},
url = {https://jeroen.r-universe.dev/V8},
}
@Manual{rsconnect,
title = {{rsconnect}: Deploy Docs, Apps, and APIs to `{Posit Connect}', `{shinyapps.io}',
and `{RPubs}'},
author = {Aron Atkins and Toph Allen and Hadley Wickham and Jonathan McPherson and JJ Allaire},
year = {2024},
note = {R package version 1.3.2,
https://github.com/rstudio/rsconnect},
url = {https://rstudio.github.io/rsconnect/},
}
@Manual{htmltools,
title = {{htmltools}: Tools for HTML},
author = {Joe Cheng and Carson Sievert and Barret Schloerke and Winston Chang and Yihui Xie and Jeff Allen},
year = {2024},
note = {R package version 0.5.8.1,
https://rstudio.github.io/htmltools/},
url = {https://github.com/rstudio/htmltools},
}
@Manual{httr,
title = {{httr}: Tools for Working with URLs and HTTP},
author = {Hadley Wickham},
year = {2023},
note = {R package version 1.4.7, https://github.com/r-lib/httr},
url = {https://httr.r-lib.org/},
}
@Manual{shinyjs,
title = {{shinyjs}: Easily Improve the User Experience of Your Shiny Apps in Seconds},
author = {Dean Attali},
year = {2021},
note = {R package version 2.1.0},
url = {https://deanattali.com/shinyjs/},
}
@Manual{shinyWidgets,
title = {{shinyWidgets}: Custom Inputs Widgets for Shiny},
author = {Victor Perrier and Fanny Meyer and David Granjon},
year = {2024},
note = {R package version 0.8.7,
https://dreamrs.github.io/shinyWidgets/},
url = {https://github.com/dreamRs/shinyWidgets},
}
@Manual{dtplyr,
title = {{dtplyr}: Data Table Back-End for `{dplyr}'},
author = {Hadley Wickham and Maximilian Girlich and Mark Fairbanks and Ryan Dickerson},
year = {2023},
note = {R package version 1.3.1, https://github.com/tidyverse/dtplyr},
url = {https://dtplyr.tidyverse.org},
}
@Article{RJ-2021-048,
author = {Henrik Bengtsson},
title = {A Unifying Framework for Parallel and Distributed Processing in R using Futures},
year = {2021},
journal = {The R Journal},
doi = {10.32614/RJ-2021-048},
url = {https://doi.org/10.32614/RJ-2021-048},
pages = {208--227},
volume = {13},
number = {2},
}
@Article{RJ-2021-048,
author = {Henrik Bengtsson},
title = {A Unifying Framework for Parallel and Distributed Processing in R using Futures},
year = {2021},
journal = {The R Journal},
doi = {10.32614/RJ-2021-048},
url = {https://doi.org/10.32614/RJ-2021-048},
pages = {208--227},
volume = {13},
number = {2},
}
@Manual{gt,
title = {{gt}: Easily Create Presentation-Ready Display Tables},
author = {Richard Iannone and Joe Cheng and Barret Schloerke and Ellis Hughes and Alexandra Lauer and JooYoung Seo and Ken Brevoort and Olivier Roy},
year = {2024},
note = {R package version 0.11.1, https://github.com/rstudio/gt},
url = {https://gt.rstudio.com},
}
@Manual{markdown,
title = {{markdown}: Render Markdown with `{commonmark}'},
author = {Yihui Xie and JJ Allaire and Jeffrey Horner},
year = {2024},
note = {R package version 1.13},
url = {https://github.com/rstudio/markdown},
}
@Manual{pingr,
title = {{pingr}: Check if a Remote Computer is Up},
author = {Gábor Csárdi},
year = {2024},
note = {R package version 2.0.4, https://github.com/r-lib/pingr},
url = {https://r-lib.github.io/pingr/},
}
@Manual{RSelenium,
title = {{RSelenium}: R Bindings for `{Selenium WebDriver}'},
author = {John Harrison},
year = {2022},
note = {R package version 1.7.9},
url = {https://docs.ropensci.org/RSelenium/},
}
@Manual{shinybusy,
title = {{shinybusy}: Busy Indicators and Notifications for `{Shiny}' Applications},
author = {Fanny Meyer and Victor Perrier},
year = {2024},
note = {R package version 0.3.3,
https://dreamrs.github.io/shinybusy/},
url = {https://github.com/dreamRs/shinybusy},
}
@Manual{jsPsychMonkeys,
title = {{jsPsychMonkeys}: Release monkeys to a jsPsych experiment using the R package
{targets}, docker and {RSelenium}},
author = {Gorka Navarrete},
year = {2024},
note = {R package version 0.3.5.902, commit af525ed97a2d512bdcecb374b78a9d7dc3494096},
url = {https://github.com/gorkang/jsPsychMonkeys},
}
@Manual{remotes,
title = {{remotes}: R Package Installation from Remote Repositories, Including
`{GitHub}'},
author = {Gábor Csárdi and Jim Hester and Hadley Wickham and Winston Chang and Martin Morgan and Dan Tenenbaum},
year = {2024},
note = {R package version 2.5.0, https://github.com/r-lib/remotes#readme},
url = {https://remotes.r-lib.org},
}
@Manual{tictoc,
title = {{tictoc}: Functions for Timing R Scripts, as Well as Implementations of
``{Stack}'' and ``{StackList}'' Structures},
author = {Sergei Izrailev},
year = {2024},
note = {R package version 1.2.1},
url = {https://github.com/jabiru/tictoc},
}
@Manual{crayon,
title = {{crayon}: Colored Terminal Output},
author = {Gábor Csárdi},
year = {2024},
note = {R package version 1.5.3, https://github.com/r-lib/crayon},
url = {https://r-lib.github.io/crayon/},
}
@Manual{fs,
title = {{fs}: Cross-Platform File System Operations Based on `{libuv}'},
author = {Jim Hester and Hadley Wickham and Gábor Csárdi},
year = {2024},
note = {R package version 1.6.5, https://github.com/r-lib/fs},
url = {https://fs.r-lib.org},
}
@Manual{furrr,
title = {{furrr}: Apply Mapping Functions in Parallel using Futures},
author = {Davis Vaughan and Matt Dancho},
year = {2022},
note = {R package version 0.3.1,
https://furrr.futureverse.org/},
url = {https://github.com/DavisVaughan/furrr},
}
@Manual{withr,
title = {{withr}: Run Code `{With}' Temporarily Modified Global State},
author = {Jim Hester and Lionel Henry and Kirill Müller and Kevin Ushey and Hadley Wickham and Winston Chang},
year = {2024},
note = {R package version 3.0.2, https://github.com/r-lib/withr#readme},
url = {https://withr.r-lib.org},
}
@Manual{XML,
title = {{XML}: Tools for Parsing and Generating XML Within R and S-Plus},
author = {Duncan {Temple Lang}},
year = {2024},
note = {R package version 3.99-0.17},
url = {https://www.omegahat.net/RSXML/},
}
@Article{tidyverse,
title = {Welcome to the {tidyverse}},
author = {Hadley Wickham and Mara Averick and Jennifer Bryan and Winston Chang and Lucy D'Agostino McGowan and Romain François and Garrett Grolemund and Alex Hayes and Lionel Henry and Jim Hester and Max Kuhn and Thomas Lin Pedersen and Evan Miller and Stephan Milton Bache and Kirill Müller and Jeroen Ooms and David Robinson and Dana Paige Seidel and Vitalie Spinu and Kohske Takahashi and Davis Vaughan and Claus Wilke and Kara Woo and Hiroaki Yutani},
year = {2019},
journal = {Journal of Open Source Software},
volume = {4},
number = {43},
pages = {1686},
doi = {10.21105/joss.01686},
}