diff --git a/README.md b/README.md index 7d57399..9a08bab 100644 --- a/README.md +++ b/README.md @@ -1,13 +1,21 @@ -# Variational Autoencoder - Pan Cancer +# Tybalt -*Gregory Way and Casey Greene 2017* +### *A Variational Autoencoder trained on Pan-Cancer Gene Expression* + +**Gregory Way and Casey Greene 2017** [![DOI](https://zenodo.org/badge/97131241.svg)](https://zenodo.org/badge/latestdoi/97131241) The repository stores scripts to train, evaluate, and extract knowledge from -a variational autoencoder trained on 33 different cancer-types from The Cancer +a variational autoencoder (VAE) trained on 33 different cancer-types from The Cancer Genome Atlas (TCGA). +The specific VAE model is named [*Tybalt*](https://en.wikipedia.org/wiki/Tybalt) +after an instigative, cat-like character in Shakespeare's "Romeo and Juliet". Just +as the character Tybalt sets off the series of events in the play, the model Tybalt +begins the foray of VAE manifold learning in transcriptomics. +[Also, deep unsupervised learning likes cats](https://arxiv.org/abs/1112.6209). + ## The Data TCGA has collected numerous different genomic measurements from over 10,000 diff --git a/pancan_vae_keras_onehidden_warmup_batchnorm.ipynb b/tybalt_vae.ipynb similarity index 100% rename from pancan_vae_keras_onehidden_warmup_batchnorm.ipynb rename to tybalt_vae.ipynb