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Hello Biomart, Thanks for developing this package. I met HTTP error code: 404 when running below coding in China.
HTTP error code: 404
human <- useEnsembl(biomart = "genes", dataset = "hsapiens_gene_ensembl", mirror='asia') mouse <- useEnsembl(biomart = "genes", dataset = "mmusculus_gene_ensembl", mirror='asia') GeneMatrix=read.csv(file="C:/Users/hyjfo/Documents/mouse_var.csv", header = TRUE, sep = ",", quote = "\"") mouse_gene <- GeneMatrix[,1] human_gene <- getLDS(attributes = c("mgi_symbol"), filters = "mgi_symbol", values = mouse_gene, mart = mouse, attributesL = c("hgnc_symbol"), martL = human, uniqueRows=TRUE) Error: biomaRt has encountered an unknown server error. HTTP error code: 404 Please report this on the Bioconductor support site at https://support.bioconductor.org/ Consider trying one of the Ensembl mirrors (for more details look at ?useEnsembl)
Could you please help me with this? Thanks! Best, Yuanjian
The text was updated successfully, but these errors were encountered:
I thought it could be the China connection issue. So, I asked my friend in Houston running below coding and met HTTP error code: 502
HTTP error code: 502
human <- useEnsembl(biomart = "genes", dataset = "hsapiens_gene_ensembl", mirror='useast') mouse <- useEnsembl(biomart = "genes", dataset = "mmusculus_gene_ensembl", mirror='useast') GeneMatrix=read.csv(file="C:/Users/hyjfo/Documents/mouse_var.csv", header = TRUE, sep = ",", quote = "\"") mouse_gene <- GeneMatrix[,1] human_gene <- getLDS(attributes = c("mgi_symbol"), filters = "mgi_symbol", values = mouse_gene, mart = mouse, attributesL = c("hgnc_symbol"), martL = human, uniqueRows=TRUE) Error: biomaRt has encountered an unknown server error. HTTP error code: 502 Please report this on the Bioconductor support site at https://support.bioconductor.org/ Consider trying one of the Ensembl mirrors (for more details look at ?useEnsembl)
I also tried below coding, but doesn't work, either.
human <- useEnsembl(biomart = "genes", dataset = "hsapiens_gene_ensembl", host="https://dec2021.archive.ensembl.org/") mouse <- useEnsembl(biomart = "genes", dataset = "mmusculus_gene_ensembl", host="https://dec2021.archive.ensembl.org/") GeneMatrix=read.csv(file="C:/Users/hyjfo/Documents/mouse_var.csv", header = TRUE, sep = ",", quote = "\"") mouse_gene <- GeneMatrix[,1] human_gene <- getLDS(attributes = c("mgi_symbol"), filters = "mgi_symbol", values = mouse_gene, mart = mouse, attributesL = c("hgnc_symbol"), martL = human, uniqueRows=TRUE)
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Hello Biomart,
Thanks for developing this package.
I met
HTTP error code: 404
when running below coding in China.Could you please help me with this?
Thanks!
Best,
Yuanjian
The text was updated successfully, but these errors were encountered: