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Using getGenome() I am unable to download genomes that are not reference genomes, which is a problem because I am working with mostly uncharacterized or less characterized bacteria. This problem is the same no matter what arguments I change, what database I pull from, or how I list the organism
Unfortunately no GENOME file could be found for organism '1506'. Thus, the download of this organism has been omitted. Have you tried to specify 'reference = FALSE' ?
This is the same error I find in the guide, and the exact same problem is referenced, but it does not provide a solution and it appears there may be an issue with the package itself when retrieving the genomes because the solution it provides shows the exact same message (attached)
The text was updated successfully, but these errors were encountered:
Using getGenome() I am unable to download genomes that are not reference genomes, which is a problem because I am working with mostly uncharacterized or less characterized bacteria. This problem is the same no matter what arguments I change, what database I pull from, or how I list the organism
genome <- getGenome(db - "ensembl", organism = taxon_id)
Unfortunately no GENOME file could be found for organism '1506'. Thus, the download of this organism has been omitted. Have you tried to specify 'reference = FALSE' ?
This is the same error I find in the guide, and the exact same problem is referenced, but it does not provide a solution and it appears there may be an issue with the package itself when retrieving the genomes because the solution it provides shows the exact same message (attached)
The text was updated successfully, but these errors were encountered: