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Using release 1, dated 2021-03-01, downloaded as FASTA format:
$ grep -E "(sp|cf|var)\." oomycetedb_whole_2022_07_06_03_05_06.fa | cut -f 1 -d "|" >name=Perofascia sp. >name=Phytophthora alni subsp.alni >name=Phytophthora alni subsp.alni >name=Phytophthora alni subsp.alni >name=Phytophthora alni subsp.alni >name=Phytophthora alni subsp.multiformis >name=Phytophthora alni subsp.uniformis >name=Phytophthora cf.citrophthora >name=Phytophthora cinnamomi var.robiniae >name=Phytophthora cinnamomi var.robiniae >name=Phytophthora sp.acacia >name=Phytophthora sp.kununurra >name=Phytophthora sp.paludosa >name=Phytophthora sp.pecan >name=Phytophthora sp.persoonii >name=Phytophthora sp.raspberry >name=Phytophthora sp.walnut >name=Pythium ultimum var.sporangiiferum >name=Salisapilia sp. >name=Lagenidium sp.pulchrum >name=Lagenidium sp.sinuatum >name=Pythium ultimum var.sporangiiferum
It appears that all the spaces are missing where sp., subsp., cf. and var. are followed by another word.
sp.
subsp.
cf.
var.
(Cross reference #14 for the spaces needing to be replaced by underscores)
The text was updated successfully, but these errors were encountered:
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Using release 1, dated 2021-03-01, downloaded as FASTA format:
It appears that all the spaces are missing where
sp.
,subsp.
,cf.
andvar.
are followed by another word.(Cross reference #14 for the spaces needing to be replaced by underscores)
The text was updated successfully, but these errors were encountered: