From 29ca91467b60191e41ef6cda5b3a56b3c5458cdf Mon Sep 17 00:00:00 2001 From: Blampey Quentin Date: Tue, 17 Sep 2024 11:04:01 +0200 Subject: [PATCH] v1.1.5 --- CHANGELOG.md | 6 ++++-- pyproject.toml | 2 +- workflow/config/macsima/base.yaml | 2 +- 3 files changed, 6 insertions(+), 4 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 193d2c8e..763a41d7 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,8 +1,10 @@ -## [1.x.x] - 2024-xx-xx +## [1.1.5] - 2024-09-17 ### Fix - Accept `object` dtype for channel names (#114) -- Update MACSima reader to support the latest file format + +### Changed +- Update MACSima reader to read the channel names of the latest file format ## [1.1.4] - 2024-08-21 diff --git a/pyproject.toml b/pyproject.toml index 3feefa86..fa2bfac1 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "sopa" -version = "1.1.4" +version = "1.1.5" description = "Spatial-omics pipeline and analysis" documentation = "https://gustaveroussy.github.io/sopa" homepage = "https://gustaveroussy.github.io/sopa" diff --git a/workflow/config/macsima/base.yaml b/workflow/config/macsima/base.yaml index f6f7e0ec..0d48db06 100644 --- a/workflow/config/macsima/base.yaml +++ b/workflow/config/macsima/base.yaml @@ -9,7 +9,7 @@ patchify: segmentation: cellpose: diameter: 35 - channels: ["DAPI (000)"] + channels: ["DAPI"] flow_threshold: 2 cellprob_threshold: -6 min_area: 400