Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[Feature] Allow setting of run_name in sopa explorer write #139

Open
pakiessling opened this issue Oct 16, 2024 · 2 comments
Open

[Feature] Allow setting of run_name in sopa explorer write #139

pakiessling opened this issue Oct 16, 2024 · 2 comments

Comments

@pakiessling
Copy link
Contributor

run_name in the .xenium controls how samples appear in the xenium explorer
Right now image_key is used here which leads to all Xenium samples appearing as morphology_focus in the Xenium explorer.

grafik

I think it would be nice to let the user specify a sample name, which would make it less confusing to work with multiple samples.

Let me know what you think, I could also try and do a PR :)

@quentinblampey
Copy link
Collaborator

Hi @pakiessling, this is indeed interesting for Xenium data. Since it's a very minor change, I'll do it myself quickly now, and it will be available for sopa==2.0.0!

@pakiessling
Copy link
Contributor Author

Cool thanks a lot!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants