Execute ./lift.sh to lift GWAS variant coordinates from GRCh36 to GRCh38.
Run prep_input_coloc.R to create input files formatted for eQTL Catalogue queries and coloc.
Run the script run_coloc.R to obtain data from eQTL catalogue and perform colocalization.
This step was performed in an interactive job with 8 CPUs and 64GB of RAM.