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indra/gilda incompatible dependencies #137

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jim-sheldon opened this issue Apr 11, 2024 · 2 comments
Closed

indra/gilda incompatible dependencies #137

jim-sheldon opened this issue Apr 11, 2024 · 2 comments
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@jim-sheldon
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indra depends on markupsafe<2.1.0

gilda depends on flask>=3.0 depends on Werkzeug>=3.0.0 depends on MarkupSafe>=2.1.1

short-term workaround: use gilda < 1.1.0

long-term recommendation: automated nightly integration smoke tests

@jim-sheldon jim-sheldon added the bug Something isn't working label Apr 11, 2024
@bgyori
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bgyori commented Apr 11, 2024

This is indeed an apparent conflict, though in practice, gilda works without issues with markupsafe==2.0.1, and also, even in INDRA, this is only a potential issue if one wants to run its REST API locally which is not common. I am looking into solving this by changing the dependency structure in INDRA, but still, I don't think this is causing any practical issues.

@bgyori
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bgyori commented Apr 11, 2024

Fixed in sorgerlab/indra#1440

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