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adf.json
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{
"$schema": "http://schema.management.azure.com/schemas/2015-01-01/deploymentTemplate.json#",
"contentVersion": "1.0.0.0",
"parameters": {
"adfName": {
"type": "string",
"defaultValue": "",
"metadata": {
"description": "Name of data factory service. If empty, name will be generated."
}
},
"fhirServerUrl": {
"type": "string",
"defaultValue": "http://vonk.fhire.ly",
"metadata": {
"description": "FHIR server URL"
}
},
"aadAuthority": {
"type": "string",
"defaultValue": "https://login.microsoftonline.com/common",
"metadata": {
"description": "OAuth Authority for FHIR server"
}
},
"aadClientId": {
"type": "string",
"defaultValue": "",
"metadata": {
"description": "AAD client application id for accessing FHIR server"
}
},
"aadClientSecret": {
"type": "string",
"defaultValue": "",
"metadata": {
"description": "AAD client secret"
}
},
"aadAudience": {
"type": "string",
"defaultValue": "",
"metadata": {
"description": "Audience (resource) of the FHIR API app registration"
}
},
"batchVmSize": {
"type": "string",
"defaultValue": "Standard_A2_v2",
"allowedValues": [
"Standard_A1_v2",
"Standard_A2_v2",
"Standard_A4_v2",
"Standard_A8_v2"
],
"metadata": {
"description": "Size of VMs in Azure Batch"
}
},
"storageAccountType": {
"type": "string",
"defaultValue": "Standard_LRS",
"allowedValues": [
"Standard_LRS",
"Standard_GRS",
"Standard_ZRS"
],
"metadata": {
"description": "Storage Account type"
}
},
"sqlServerAdminUserName": {
"type": "string",
"defaultValue": "dbadmin",
"metadata": {
"description": "Administrator for SQL server"
}
},
"sqlServerAdminPassword": {
"type": "securestring",
"metadata": {
"description": "Administrator password for SQL server"
}
},
"adfCustomArtifactsBaseUrl": {
"type":"string",
"defaultValue": "https://fhirdemo.blob.core.windows.net/adf/",
"metadata": {
"description": "HTTP location of custom artifacts (activities), etc."
}
}
},
"variables": {
"adfName": "[if(empty(parameters('adfName')), concat('fhiradf', uniqueString(resourceGroup().id)), parameters('adfName'))]",
"storageAccountName": "[concat(toLower(variables('adfName')),'sa')]",
"batchAccountName": "[concat(toLower(variables('adfName')),'batch')]",
"batchPoolName": "fhirpool1",
"sqlServerName": "[concat(toLower(variables('adfName')),'sql')]",
"sqlDatabaseName": "fhir",
"useAad": "[and(and(not(empty(parameters('aadClientId'))),not(empty(parameters('aadClientSecret')))),not(empty(parameters('aadAudience'))))]",
"blobStorageLinkName": "AzureBlobStorage1",
"sqlLinkName": "AzureSqlDatabase1",
"batchLinkName": "AzureBatch1",
"httpServerLinkName": "ArtifactsHttp1",
"customExportActivityZip": "publish.zip",
"customExportActivityScript": "CustomActivity.ps1",
"customActivityZipDatasetName": "customExportActivityZip",
"customActivityScriptDatasetName": "customExportActivityScript",
"customActivityBlobFolderName": "custom-activity",
"customActivityZipBlobDatasetName": "customExportActivityBlobZip",
"customActivityScriptBlobDatasetName": "customExportActivityBlobScript",
"copyArtifactsPipelineName": "copyArtifacts",
"fhirExportPipeLineName": "FHIRExport",
"fhirExportBlobFolderName": "fhirexport",
"fhirExportPatientBlobName": "patient.json",
"fhirExportWeightBlobName": "weight.json",
"fhirExportHeightBlobName": "height.json",
"copyActivityPatientBlobDatasetName": "PatientBlob",
"copyActivityWeightBlobDatasetName": "WeightBlob",
"copyActivityHeightBlobDatasetName": "HeightBlob",
"copyActivityPatientSqlDatasetName": "PatientSql",
"copyActivityWeightSqlDatasetName": "WeightSql",
"copyActivityHeightSqlDatasetName": "HeightSql",
"copyActivitySummarySqlDatasetName": "PatientSummarySql"
},
"resources": [
{
"type": "Microsoft.Storage/storageAccounts",
"name": "[variables('storageAccountName')]",
"apiVersion": "2017-10-01",
"location": "[resourceGroup().location]",
"sku": {
"name": "[parameters('storageAccountType')]"
},
"kind": "Storage",
"properties": {}
},
{
"name": "[variables('batchAccountName')]",
"type": "Microsoft.Batch/batchAccounts",
"apiVersion": "2017-09-01",
"location": "[resourceGroup().location]",
"dependsOn": [
"[resourceId('Microsoft.Storage/storageAccounts', variables('storageAccountName'))]"
],
"properties": {
"autoStorage": {
"storageAccountId": "[resourceId('Microsoft.Storage/storageAccounts', variables('storageAccountName'))]"
},
"poolAllocationMode": "BatchService"
},
"resources": []
},
{
"type": "Microsoft.Batch/batchAccounts/pools",
"name": "[concat(variables('batchAccountName'), '/', variables('batchPoolName'))]",
"apiVersion": "2017-09-01",
"scale": null,
"properties": {
"vmSize": "[parameters('batchVmSize')]",
"interNodeCommunication": "Disabled",
"maxTasksPerNode": 4,
"taskSchedulingPolicy": {
"nodeFillType": "Spread"
},
"deploymentConfiguration": {
"virtualMachineConfiguration": {
"imageReference": {
"publisher": "MicrosoftWindowsServer",
"offer": "WindowsServer",
"sku": "2016-Datacenter",
"version": "latest"
},
"nodeAgentSkuId": "batch.node.windows amd64",
"windowsConfiguration": {
"enableAutomaticUpdates": false
}
}
},
"scaleSettings": {
"fixedScale": {
"targetDedicatedNodes": 1,
"targetLowPriorityNodes": 0,
"resizeTimeout": "PT15M"
}
}
},
"dependsOn": [
"[resourceId('Microsoft.Batch/batchAccounts', variables('batchAccountName'))]"
]
},
{
"name": "[variables('sqlServerName')]",
"type": "Microsoft.Sql/servers",
"apiVersion": "2015-05-01-preview",
"location": "[resourceGroup().location]",
"identity": {
"type": "SystemAssigned"
},
"properties": {
"administratorLogin": "[parameters('sqlServerAdminUserName')]",
"administratorLoginPassword": "[parameters('sqlServerAdminPassword')]",
"version": "12.0"
},
"resources": [
{
"type": "firewallrules",
"apiVersion": "2014-04-01",
"dependsOn": [
"[variables('sqlServerName')]"
],
"location": "[resourceGroup().location]",
"name": "AllowAllWindowsAzureIps",
"properties": {
"endIpAddress": "0.0.0.0",
"startIpAddress": "0.0.0.0"
}
}
]
},
{
"type": "Microsoft.Sql/servers/databases",
"sku": {
"name": "S0",
"tier": "Standard"
},
"kind": "v12.0,user",
"name": "[concat(variables('sqlServerName'), '/', variables('sqlDatabaseName'))]",
"apiVersion": "2017-03-01-preview",
"location": "[resourceGroup().location]",
"scale": null,
"properties": {
"collation": "SQL_Latin1_General_CP1_CI_AS",
"maxSizeBytes": 268435456000,
"catalogCollation": "SQL_Latin1_General_CP1_CI_AS",
"zoneRedundant": false
},
"dependsOn": [
"[resourceId('Microsoft.Sql/servers', variables('sqlServerName'))]"
]
},
{
"name": "[variables('adfName')]",
"type": "Microsoft.DataFactory/factories",
"apiVersion": "2018-06-01",
"location": "[resourceGroup().location]",
"identity": {
"type": "SystemAssigned"
},
"properties": {
},
"resources": []
},
{
"name": "[concat(variables('adfName'), '/', variables('sqlLinkName'))]",
"type": "Microsoft.DataFactory/factories/linkedServices",
"apiVersion": "2018-06-01",
"properties": {
"annotations": [],
"type": "AzureSqlDatabase",
"typeProperties": {
"connectionString": "[concat('Data Source=tcp:', reference(resourceId('Microsoft.Sql/servers/', variables('sqlserverName'))).fullyQualifiedDomainName, ',1433;Initial Catalog=', variables('sqlDatabaseName'), ';User Id=', parameters('sqlServerAdminUserName'), '@', variables('sqlServerName'), ';Password=', parameters('sqlServerAdminPassword'), ';')]"
}
},
"dependsOn": [
"[resourceId('Microsoft.DataFactory/factories', variables('adfName'))]",
"[resourceId('Microsoft.Sql/servers', variables('sqlServerName'))]"
]
},
{
"name": "[concat(variables('adfName'), '/', variables('blobStorageLinkName'))]",
"type": "Microsoft.DataFactory/factories/linkedServices",
"apiVersion": "2018-06-01",
"properties": {
"annotations": [],
"type": "AzureBlobStorage",
"typeProperties": {
"connectionString": "[concat('DefaultEndpointsProtocol=https;AccountName=',variables('storageAccountName'),';AccountKey=',concat(listKeys(resourceId('Microsoft.Storage/storageAccounts', variables('storageAccountName')),'2015-05-01-preview').key1))]"
}
},
"dependsOn": [
"[resourceId('Microsoft.Storage/storageAccounts', variables('storageAccountName'))]",
"[resourceId('Microsoft.DataFactory/factories', variables('adfName'))]"
]
},
{
"name": "[concat(variables('adfName'), '/', variables('batchLinkName'))]",
"type": "Microsoft.DataFactory/factories/linkedServices",
"apiVersion": "2018-06-01",
"properties": {
"annotations": [],
"type": "AzureBatch",
"typeProperties": {
"accountName": "[variables('batchAccountName')]",
"accessKey": {
"type": "SecureString",
"value": "[listKeys(resourceId('Microsoft.Batch/batchAccounts', variables('batchAccountName')), '2017-09-01').primary]"
},
"batchUri": "[concat('https://', variables('batchAccountName'), '.' , resourceGroup().location, '.batch.azure.com')]",
"poolName": "[variables('batchPoolName')]",
"linkedServiceName": {
"referenceName": "[variables('blobStorageLinkName')]",
"type": "LinkedServiceReference"
}
}
},
"dependsOn": [
"[resourceId('Microsoft.DataFactory/factories', variables('adfName'))]",
"[resourceId('Microsoft.Batch/batchAccounts', variables('batchAccountName'))]",
"[concat(resourceId('Microsoft.DataFactory/factories', variables('adfName')), '/linkedServices/', variables('blobStorageLinkName'))]"
]
},
{
"name": "[concat(variables('adfName'), '/', variables('httpServerLinkName'))]",
"type": "Microsoft.DataFactory/factories/linkedServices",
"apiVersion": "2018-06-01",
"properties": {
"annotations": [],
"type": "HttpServer",
"typeProperties": {
"url": "[parameters('adfCustomArtifactsBaseUrl')]",
"enableServerCertificateValidation": true,
"authenticationType": "Anonymous"
}
},
"dependsOn": [
"[resourceId('Microsoft.DataFactory/factories', variables('adfName'))]"
]
},
{
"name": "[concat(variables('adfName'), '/', variables('customActivityZipDatasetName'))]",
"type": "Microsoft.DataFactory/factories/datasets",
"apiVersion": "2018-06-01",
"properties": {
"linkedServiceName": {
"referenceName": "[variables('httpServerLinkName')]",
"type": "LinkedServiceReference"
},
"annotations": [],
"type": "HttpFile",
"typeProperties": {
"relativeUrl": "[variables('customExportActivityZip')]",
"requestMethod": "Get"
}
},
"dependsOn": [
"[concat(resourceId('Microsoft.DataFactory/factories', variables('adfName')), '/linkedServices/', variables('httpServerLinkName'))]"
]
},
{
"name": "[concat(variables('adfName'), '/', variables('customActivityScriptDatasetName'))]",
"type": "Microsoft.DataFactory/factories/datasets",
"apiVersion": "2018-06-01",
"properties": {
"linkedServiceName": {
"referenceName": "[variables('httpServerLinkName')]",
"type": "LinkedServiceReference"
},
"annotations": [],
"type": "HttpFile",
"typeProperties": {
"relativeUrl": "[variables('customExportActivityScript')]",
"requestMethod": "Get"
}
},
"dependsOn": [
"[concat(resourceId('Microsoft.DataFactory/factories', variables('adfName')), '/linkedServices/', variables('httpServerLinkName'))]"
]
},
{
"name": "[concat(variables('adfName'), '/', variables('customActivityZipBlobDatasetName'))]",
"type": "Microsoft.DataFactory/factories/datasets",
"apiVersion": "2018-06-01",
"properties": {
"linkedServiceName": {
"referenceName": "[variables('blobStorageLinkName')]",
"type": "LinkedServiceReference"
},
"annotations": [],
"type": "AzureBlob",
"typeProperties": {
"fileName": "[variables('customExportActivityZip')]",
"folderPath": "[variables('customActivityBlobFolderName')]"
}
},
"dependsOn": [
"[concat(resourceId('Microsoft.DataFactory/factories', variables('adfName')), '/linkedServices/', variables('blobStorageLinkName'))]"
]
},
{
"name": "[concat(variables('adfName'), '/', variables('customActivityScriptBlobDatasetName'))]",
"type": "Microsoft.DataFactory/factories/datasets",
"apiVersion": "2018-06-01",
"properties": {
"linkedServiceName": {
"referenceName": "[variables('blobStorageLinkName')]",
"type": "LinkedServiceReference"
},
"annotations": [],
"type": "AzureBlob",
"typeProperties": {
"fileName": "[variables('customExportActivityScript')]",
"folderPath": "[variables('customActivityBlobFolderName')]"
}
},
"dependsOn": [
"[concat(resourceId('Microsoft.DataFactory/factories', variables('adfName')), '/linkedServices/', variables('blobStorageLinkName'))]"
]
},
{
"name": "[concat(variables('adfName'), '/', variables('copyActivityPatientBlobDatasetName'))]",
"type": "Microsoft.DataFactory/factories/datasets",
"apiVersion": "2018-06-01",
"properties": {
"linkedServiceName": {
"referenceName": "[variables('blobStorageLinkName')]",
"type": "LinkedServiceReference"
},
"annotations": [],
"type": "AzureBlob",
"structure": [
{
"name": "id",
"type": "String"
},
{
"name": "gender",
"type": "String"
},
{
"name": "birthDate",
"type": "String"
},
{
"name": "multipleBirth",
"type": "Boolean"
},
{
"name": "lastUpdated",
"type": "String"
},
{
"name": "maritalStatus",
"type": "String"
},
{
"name": "latitute",
"type": "Double"
},
{
"name": "longitude",
"type": "Double"
}
],
"typeProperties": {
"format": {
"type": "JsonFormat",
"filePattern": "setOfObjects",
"jsonPathDefinition": {
"id": "$.['id']",
"gender": "$.['gender']",
"birthDate": "$.['birthDate']",
"multipleBirth": "$.['multipleBirthBoolean']",
"lastUpdated": "$.['meta']['lastUpdated']",
"maritalStatus": "$.['maritalStatus']['text']",
"latitute": "$.['address'][0]['extension'][0]['extension'][?(@.url == 'latitude')]['valueDecimal']",
"longitude": "$.['address'][0]['extension'][0]['extension'][?(@.url == 'longitude')]['valueDecimal']",
"SSN": "$.['identifier'][?(@.system == 'http://hl7.org/fhir/sid/us-ssn')]['value']"
}
},
"fileName": "[variables('fhirExportPatientBlobName')]",
"folderPath": "[variables('fhirExportBlobFolderName')]"
}
},
"dependsOn": [
"[concat(resourceId('Microsoft.DataFactory/factories', variables('adfName')), '/linkedServices/', variables('blobStorageLinkName'))]"
]
},
{
"name": "[concat(variables('adfName'), '/', variables('copyActivityPatientSqlDatasetName'))]",
"type": "Microsoft.DataFactory/factories/datasets",
"apiVersion": "2018-06-01",
"properties": {
"linkedServiceName": {
"referenceName": "[variables('sqlLinkName')]",
"type": "LinkedServiceReference"
},
"annotations": [],
"type": "AzureSqlTable",
"structure": [
{
"name": "id",
"type": "String"
},
{
"name": "gender",
"type": "String"
},
{
"name": "birthDate",
"type": "DateTime"
},
{
"name": "multipleBirth",
"type": "String"
},
{
"name": "lastUpdated",
"type": "DateTime"
},
{
"name": "maritalStatus",
"type": "String"
},
{
"name": "lattitude",
"type": "Double"
},
{
"name": "longitude",
"type": "Double"
}
],
"typeProperties": {
"tableName": "[concat('[', 'dbo].[Patients]')]"
}
},
"dependsOn": [
"[concat(resourceId('Microsoft.DataFactory/factories', variables('adfName')), '/linkedServices/', variables('sqlLinkName'))]"
]
},
{
"name": "[concat(variables('adfName'), '/', variables('copyActivityHeightBlobDatasetName'))]",
"type": "Microsoft.DataFactory/factories/datasets",
"apiVersion": "2018-06-01",
"properties": {
"linkedServiceName": {
"referenceName": "[variables('blobStorageLinkName')]",
"type": "LinkedServiceReference"
},
"type": "AzureBlob",
"structure": [
{
"name": "id",
"type": "String"
},
{
"name": "issued",
"type": "String"
},
{
"name": "valueQuantity.value",
"type": "Double"
},
{
"name": "valueQuantity.unit",
"type": "String"
},
{
"name": "subject.reference",
"type": "String"
}
],
"typeProperties": {
"format": {
"type": "JsonFormat",
"filePattern": "setOfObjects",
"jsonPathDefinition": {
"id": "$.['id']",
"issued": "$.['issued']",
"valueQuantity.value": "$.['valueQuantity']['value']",
"valueQuantity.unit": "$.['valueQuantity']['unit']",
"subject.reference": "$.['subject']['reference']"
}
},
"fileName": "[variables('fhirExportHeightBlobName')]",
"folderPath": "[variables('fhirExportBlobFolderName')]"
}
},
"dependsOn": [
"[concat(resourceId('Microsoft.DataFactory/factories', variables('adfName')), '/linkedServices/', variables('blobStorageLinkName'))]"
]
},
{
"name": "[concat(variables('adfName'), '/', variables('copyActivityHeightSqlDatasetName'))]",
"type": "Microsoft.DataFactory/factories/datasets",
"apiVersion": "2018-06-01",
"properties": {
"linkedServiceName": {
"referenceName": "[variables('sqlLinkName')]",
"type": "LinkedServiceReference"
},
"type": "AzureSqlTable",
"structure": [
{
"name": "id",
"type": "String"
},
{
"name": "subject",
"type": "String"
},
{
"name": "height",
"type": "Double"
},
{
"name": "unit",
"type": "String"
},
{
"name": "issued",
"type": "DateTime"
}
],
"typeProperties": {
"tableName": "[concat('[', 'dbo].[Height]')]"
}
},
"dependsOn": [
"[concat(resourceId('Microsoft.DataFactory/factories', variables('adfName')), '/linkedServices/', variables('sqlLinkName'))]"
]
},
{
"name": "[concat(variables('adfName'), '/', variables('copyActivityWeightSqlDatasetName'))]",
"type": "Microsoft.DataFactory/factories/datasets",
"apiVersion": "2018-06-01",
"properties": {
"linkedServiceName": {
"referenceName": "[variables('sqlLinkName')]",
"type": "LinkedServiceReference"
},
"type": "AzureSqlTable",
"structure": [
{
"name": "id",
"type": "String"
},
{
"name": "subject",
"type": "String"
},
{
"name": "weight",
"type": "Double"
},
{
"name": "unit",
"type": "String"
},
{
"name": "issued",
"type": "DateTime"
}
],
"typeProperties": {
"tableName": "[concat('[', 'dbo].[Weight]')]"
}
},
"dependsOn": [
"[concat(resourceId('Microsoft.DataFactory/factories', variables('adfName')), '/linkedServices/', variables('sqlLinkName'))]"
]
},
{
"name": "[concat(variables('adfName'), '/', variables('copyActivitySummarySqlDatasetName'))]",
"type": "Microsoft.DataFactory/factories/datasets",
"apiVersion": "2018-06-01",
"properties": {
"linkedServiceName": {
"referenceName": "[variables('sqlLinkName')]",
"type": "LinkedServiceReference"
},
"type": "AzureSqlTable",
"structure": [
{
"name": "patientId",
"type": "String"
},
{
"name": "ageYears",
"type": "Int16"
},
{
"name": "lattitude",
"type": "Double"
},
{
"name": "longitude",
"type": "Double"
},
{
"name": "weight",
"type": "Double"
},
{
"name": "height",
"type": "Double"
}
],
"typeProperties": {
"tableName": "[concat('[', 'dbo].[PatientSummary]')]"
}
},
"dependsOn": [
"[concat(resourceId('Microsoft.DataFactory/factories', variables('adfName')), '/linkedServices/', variables('sqlLinkName'))]"
]
},
{
"name": "[concat(variables('adfName'), '/', variables('copyActivityWeightBlobDatasetName'))]",
"type": "Microsoft.DataFactory/factories/datasets",
"apiVersion": "2018-06-01",
"properties": {
"linkedServiceName": {
"referenceName": "[variables('blobStorageLinkName')]",
"type": "LinkedServiceReference"
},
"type": "AzureBlob",
"structure": [
{
"name": "id",
"type": "String"
},
{
"name": "subject",
"type": "String"
},
{
"name": "issued",
"type": "String"
},
{
"name": "valueQuantity.value",
"type": "Double"
},
{
"name": "valueQuantity.unit",
"type": "String"
}
],
"typeProperties": {
"format": {
"type": "JsonFormat",
"filePattern": "setOfObjects",
"jsonPathDefinition": {
"id": "$.['id']",
"subject": "$.['subject']['reference']",
"issued": "$.['issued']",
"valueQuantity.value": "$.['valueQuantity']['value']",
"valueQuantity.unit": "$.['valueQuantity']['unit']"
}
},
"fileName": "[variables('fhirExportWeightBlobName')]",
"folderPath": "[variables('fhirExportBlobFolderName')]"
}
},
"dependsOn": [
"[concat(resourceId('Microsoft.DataFactory/factories', variables('adfName')), '/linkedServices/', variables('blobStorageLinkName'))]"
]
},
{
"name": "[concat(variables('adfName'), '/', variables('fhirExportPipeLineName'))]",
"type": "Microsoft.DataFactory/factories/pipelines",
"apiVersion": "2018-06-01",
"properties": {
"activities": [
{
"name": "Copy Script",
"type": "Copy",
"dependsOn": [],
"policy": {
"timeout": "7.00:00:00",
"retry": 0,
"retryIntervalInSeconds": 30,
"secureOutput": false,
"secureInput": false
},
"userProperties": [],
"typeProperties": {
"source": {
"type": "HttpSource",
"httpRequestTimeout": "00:01:40"
},
"sink": {
"type": "BlobSink"
},
"enableStaging": false,
"dataIntegrationUnits": 0
},
"inputs": [
{
"referenceName": "[variables('customActivityScriptDatasetName')]",
"type": "DatasetReference",
"parameters": {}
}
],
"outputs": [
{
"referenceName": "[variables('customActivityScriptBlobDatasetName')]",
"type": "DatasetReference",
"parameters": {}
}
]
},
{
"name": "Copy Zip",
"type": "Copy",
"dependsOn": [],
"policy": {
"timeout": "7.00:00:00",
"retry": 0,
"retryIntervalInSeconds": 30,
"secureOutput": false,
"secureInput": false
},
"userProperties": [],
"typeProperties": {
"source": {
"type": "HttpSource",
"httpRequestTimeout": "00:01:40"
},
"sink": {
"type": "BlobSink"
},
"enableStaging": false,
"dataIntegrationUnits": 0
},
"inputs": [
{
"referenceName": "[variables('customActivityZipDatasetName')]",
"type": "DatasetReference",
"parameters": {}
}
],
"outputs": [
{
"referenceName": "[variables('customActivityZipBlobDatasetName')]",
"type": "DatasetReference",
"parameters": {}
}
]
},
{
"name": "PatientExport",
"type": "Custom",
"dependsOn": [
{
"activity": "Copy Script",
"dependencyConditions": [
"Succeeded"
]
},
{
"activity": "Copy Zip",
"dependencyConditions": [
"Succeeded"
]
}
],
"policy": {
"timeout": "7.00:00:00",
"retry": 0,
"retryIntervalInSeconds": 30,
"secureOutput": false,
"secureInput": false
},
"userProperties": [],
"typeProperties": {
"command": "PowerShell -File .\\CustomActivity.ps1",
"resourceLinkedService": {
"referenceName": "[variables('blobStorageLinkName')]",
"type": "LinkedServiceReference"
},
"folderPath": "[variables('customActivityBlobFolderName')]",
"referenceObjects": {
"linkedServices": [],
"datasets": []
},
"extendedProperties": {
"AzureAD_Authority": "[parameters('aadAuthority')]",
"AzureAD_ClientId": "[parameters('aadClientId')]",
"AzureAD_ClientSecret": "[parameters('aadClientSecret')]",
"AzureAD_Audience": "[parameters('aadAudience')]",
"StorageConnectionString": "[concat('DefaultEndpointsProtocol=https;AccountName=',variables('storageAccountName'),';AccountKey=',concat(listKeys(resourceId('Microsoft.Storage/storageAccounts', variables('storageAccountName')),'2015-05-01-preview').key1))]",
"BlobFolder": "[variables('fhirExportBlobFolderName')]",
"FhirServerUrl": "[parameters('fhirServerUrl')]",
"FhirQuery": "/Patient?_count=100",
"OutputFile": "[variables('fhirExportPatientBlobName')]"
}
},
"linkedServiceName": {
"referenceName": "[variables('batchLinkName')]",
"type": "LinkedServiceReference"
}
},
{
"name": "WeightExport",
"type": "Custom",
"dependsOn": [
{
"activity": "Copy Script",
"dependencyConditions": [
"Succeeded"
]
},
{
"activity": "Copy Zip",
"dependencyConditions": [
"Succeeded"
]
}
],
"policy": {
"timeout": "7.00:00:00",
"retry": 0,
"retryIntervalInSeconds": 30,
"secureOutput": false,
"secureInput": false
},
"userProperties": [],
"typeProperties": {
"command": "PowerShell -File .\\CustomActivity.ps1",
"resourceLinkedService": {
"referenceName": "[variables('blobStorageLinkName')]",
"type": "LinkedServiceReference"
},
"folderPath": "[variables('customActivityBlobFolderName')]",
"referenceObjects": {
"linkedServices": [],
"datasets": []
},
"extendedProperties": {
"AzureAD_Authority": "[parameters('aadAuthority')]",
"AzureAD_ClientId": "[parameters('aadClientId')]",
"AzureAD_ClientSecret": "[parameters('aadClientSecret')]",
"AzureAD_Audience": "[parameters('aadAudience')]",
"StorageConnectionString": "[concat('DefaultEndpointsProtocol=https;AccountName=',variables('storageAccountName'),';AccountKey=',concat(listKeys(resourceId('Microsoft.Storage/storageAccounts', variables('storageAccountName')),'2015-05-01-preview').key1))]",
"BlobFolder": "[variables('fhirExportBlobFolderName')]",
"FhirServerUrl": "[parameters('fhirServerUrl')]",
"FhirQuery": "/Observation?code=29463-7&_count=100",
"OutputFile": "[variables('fhirExportWeightBlobName')]"
}
},
"linkedServiceName": {
"referenceName": "[variables('batchLinkName')]",
"type": "LinkedServiceReference"
}
},
{
"name": "HeightExport",
"type": "Custom",
"dependsOn": [
{
"activity": "Copy Script",
"dependencyConditions": [
"Succeeded"
]
},
{
"activity": "Copy Zip",
"dependencyConditions": [
"Succeeded"
]
}
],
"policy": {
"timeout": "7.00:00:00",
"retry": 0,
"retryIntervalInSeconds": 30,
"secureOutput": false,
"secureInput": false
},
"userProperties": [],
"typeProperties": {
"command": "PowerShell -File .\\CustomActivity.ps1",
"resourceLinkedService": {
"referenceName": "[variables('blobStorageLinkName')]",
"type": "LinkedServiceReference"
},
"folderPath": "[variables('customActivityBlobFolderName')]",
"referenceObjects": {
"linkedServices": [],
"datasets": []
},
"extendedProperties": {
"AzureAD_Authority": "[parameters('aadAuthority')]",
"AzureAD_ClientId": "[parameters('aadClientId')]",
"AzureAD_ClientSecret": "[parameters('aadClientSecret')]",
"AzureAD_Audience": "[parameters('aadAudience')]",
"StorageConnectionString": "[concat('DefaultEndpointsProtocol=https;AccountName=',variables('storageAccountName'),';AccountKey=',concat(listKeys(resourceId('Microsoft.Storage/storageAccounts', variables('storageAccountName')),'2015-05-01-preview').key1))]",
"BlobFolder": "[variables('fhirExportBlobFolderName')]",
"FhirServerUrl": "[parameters('fhirServerUrl')]",
"FhirQuery": "/Observation?code=8302-2&_count=100",
"OutputFile": "[variables('fhirExportHeightBlobName')]"
}
},
"linkedServiceName": {
"referenceName": "[variables('batchLinkName')]",
"type": "LinkedServiceReference"
}