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update the module #4

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mistrm82 opened this issue Jul 19, 2023 · 1 comment
Open

update the module #4

mistrm82 opened this issue Jul 19, 2023 · 1 comment

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@mistrm82
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the downloading_from_SRA.md lesson needs to be updated. The code as is doesn't work.

One issue was resolved using current module module load sratoolkit/3.0.2
@hwick
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hwick commented Mar 6, 2024

As of 3.5.24, code still doesn't work, even with updated sratoolkit.

One possible useful addition to this lesson could be to use curl after looking up the individual SRAs https://sra-explorer.info/#training-admin

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@mistrm82 @hwick