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troubleshooting high blacklist hits #48

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mistrm82 opened this issue Nov 22, 2022 · 0 comments
Open

troubleshooting high blacklist hits #48

mistrm82 opened this issue Nov 22, 2022 · 0 comments
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What do we do if a large percentage of reads map to blacklist regions (or many peaks are filtered out)? How do we interpret this? And what can be changed in the protocol to prevent this?
@mistrm82 mistrm82 self-assigned this May 28, 2024
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