From a0cc7e44804df08042603d380475b900e36e9e51 Mon Sep 17 00:00:00 2001 From: mavaylon1 Date: Thu, 3 Aug 2023 10:12:44 -0700 Subject: [PATCH 1/9] HERD name change --- common/resources.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/common/resources.yaml b/common/resources.yaml index bb48db4..fdf46bd 100644 --- a/common/resources.yaml +++ b/common/resources.yaml @@ -1,6 +1,6 @@ # hdmf-schema-language=2.0.2 groups: -- data_type_def: ExternalResources +- data_type_def: HERD data_type_inc: Container doc: "A set of five tables for tracking external resource references in a file. NOTE: this data type is experimental and is subject to change in a later version." From 4e03a72afcf0683d2657dcc90b40248a90ed4e67 Mon Sep 17 00:00:00 2001 From: Matthew Avaylon Date: Thu, 3 Aug 2023 10:32:01 -0700 Subject: [PATCH 2/9] Update conf.py --- docs/source/conf.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/source/conf.py b/docs/source/conf.py index b65ea2e..3974479 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -83,9 +83,9 @@ def setup(app): # built documents. # # The short X.Y version. -version = 'v1.7.0' +version = 'v1.8.0' # The full version, including alpha/beta/rc tags. -release = 'v1.7.0' +release = 'v1.8.0' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. From d9b5edbfc6044ca2e81a2b16b4bdff3589d43cd1 Mon Sep 17 00:00:00 2001 From: Matthew Avaylon Date: Thu, 3 Aug 2023 10:32:46 -0700 Subject: [PATCH 3/9] Update namespace.yaml --- common/namespace.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/common/namespace.yaml b/common/namespace.yaml index 035d31b..b174003 100644 --- a/common/namespace.yaml +++ b/common/namespace.yaml @@ -23,7 +23,7 @@ namespaces: - doc: data types for different types of sparse matrices source: sparse.yaml title: Sparse data types - version: 1.7.0 + version: 1.8.0 - name: hdmf-experimental doc: Experimental data structures provided by HDMF. These are not guaranteed to be available in the future. @@ -48,4 +48,4 @@ namespaces: - doc: data types for storing references to web accessible resources source: resources.yaml title: Resource reference data types - version: 0.4.0 + version: 0.5.0 From 9b96c4c01e71698aad59b9008da987824f0afd59 Mon Sep 17 00:00:00 2001 From: Matthew Avaylon Date: Thu, 3 Aug 2023 10:34:49 -0700 Subject: [PATCH 4/9] Update hdmf_common_release_notes.rst --- docs/source/hdmf_common_release_notes.rst | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/docs/source/hdmf_common_release_notes.rst b/docs/source/hdmf_common_release_notes.rst index 03a018d..7a7d28d 100644 --- a/docs/source/hdmf_common_release_notes.rst +++ b/docs/source/hdmf_common_release_notes.rst @@ -3,8 +3,13 @@ hdmf-common Release Notes ========================= +1.8.0 (August 4, 2023) +---------------------- +- No change in the hdmf-common namespace. See :ref:`here ` for changes to the + hdmf-experimental namespace. + 1.7.0 (June 22, 2023) -------------------- +--------------------- - No change in the hdmf-common namespace. See :ref:`here ` for changes to the hdmf-experimental namespace. From 0dab5d2b1ec377656c0451b092ac5a73f3b3f5d2 Mon Sep 17 00:00:00 2001 From: Matthew Avaylon Date: Thu, 3 Aug 2023 10:35:45 -0700 Subject: [PATCH 5/9] Update hdmf_experimental_release_notes.rst --- docs/source/hdmf_experimental_release_notes.rst | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/docs/source/hdmf_experimental_release_notes.rst b/docs/source/hdmf_experimental_release_notes.rst index c613fca..8d4e08e 100644 --- a/docs/source/hdmf_experimental_release_notes.rst +++ b/docs/source/hdmf_experimental_release_notes.rst @@ -3,6 +3,10 @@ hdmf-experimental Release Notes =============================== +0.4.0 (August 4, 2023) +---------------------- +- Updates ``ExternalResources`` to have a uniform name throughout the codebase and the literature, which is now ``HERD``. + 0.4.0 (June 22, 2023) --------------------- - In the experimental ``ExternalResources``, added a ``entity_keys`` table and removed ``keys_idx`` from the ``entities`` table. From e31df041437197dfeb76232f1640e26b04fae8d3 Mon Sep 17 00:00:00 2001 From: Matthew Avaylon Date: Thu, 3 Aug 2023 12:34:58 -0700 Subject: [PATCH 6/9] Update resources.yaml --- common/resources.yaml | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/common/resources.yaml b/common/resources.yaml index fdf46bd..eff9250 100644 --- a/common/resources.yaml +++ b/common/resources.yaml @@ -2,8 +2,7 @@ groups: - data_type_def: HERD data_type_inc: Container - doc: "A set of five tables for tracking external resource references in a file. NOTE: this data type is experimental - and is subject to change in a later version." + doc: "HDMF External Resources Data Structure. A set of six tables for tracking external resource references in a file or across multple files. datasets: - data_type_inc: Data name: keys From 22368fa80b211a145c804439b319ecdc3f941b0e Mon Sep 17 00:00:00 2001 From: Matthew Avaylon Date: Thu, 3 Aug 2023 12:36:02 -0700 Subject: [PATCH 7/9] Update resources.yaml --- common/resources.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/common/resources.yaml b/common/resources.yaml index eff9250..6799378 100644 --- a/common/resources.yaml +++ b/common/resources.yaml @@ -2,7 +2,7 @@ groups: - data_type_def: HERD data_type_inc: Container - doc: "HDMF External Resources Data Structure. A set of six tables for tracking external resource references in a file or across multple files. + doc: "HDMF External Resources Data Structure. A set of six tables for tracking external resource references in a file or across multiple files. datasets: - data_type_inc: Data name: keys From b428aeceecd334abf60bc76c3a7161574a63f2ae Mon Sep 17 00:00:00 2001 From: Ryan Ly Date: Thu, 3 Aug 2023 13:23:03 -0700 Subject: [PATCH 8/9] Update hdmf_experimental_release_notes.rst --- docs/source/hdmf_experimental_release_notes.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/source/hdmf_experimental_release_notes.rst b/docs/source/hdmf_experimental_release_notes.rst index 8d4e08e..66ce0df 100644 --- a/docs/source/hdmf_experimental_release_notes.rst +++ b/docs/source/hdmf_experimental_release_notes.rst @@ -3,7 +3,7 @@ hdmf-experimental Release Notes =============================== -0.4.0 (August 4, 2023) +0.5.0 (August 4, 2023) ---------------------- - Updates ``ExternalResources`` to have a uniform name throughout the codebase and the literature, which is now ``HERD``. From 08db7a5eaa9fd87d78dd0c495637f81aee6dd459 Mon Sep 17 00:00:00 2001 From: Ryan Ly Date: Thu, 3 Aug 2023 13:23:44 -0700 Subject: [PATCH 9/9] Update hdmf_experimental_release_notes.rst --- docs/source/hdmf_experimental_release_notes.rst | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/docs/source/hdmf_experimental_release_notes.rst b/docs/source/hdmf_experimental_release_notes.rst index 66ce0df..5890bba 100644 --- a/docs/source/hdmf_experimental_release_notes.rst +++ b/docs/source/hdmf_experimental_release_notes.rst @@ -5,7 +5,8 @@ hdmf-experimental Release Notes 0.5.0 (August 4, 2023) ---------------------- -- Updates ``ExternalResources`` to have a uniform name throughout the codebase and the literature, which is now ``HERD``. +- Updates ``ExternalResources`` to have a uniform name throughout the codebase and the literature, which is now ``HERD`` + (HDMF External Resources Data). 0.4.0 (June 22, 2023) ---------------------