config.yml

#! This file is for the set up of xxx_med_to_csv program.
# Check the README file for more details on how to fill this config.
#* Three types of parameters:
#   - "infos_col" : for 1 column output 
#   - "infos_lab" : for labelled output
#   - "infos_opt" : for further options
#* Information should be in this format:
#   Keys : values , where : 
#       - Keys are the column names that you want in the output file
#       - Values are, for infos_col: row number - 1 (Start index :0)
#                     for infos_lab: letters used in medAssociate exercise
#                     for infos_opt: see next points
#* - cut: for cutting an output on a character "." into 2 columns :
#     The value must be a list of list of 4 elements :
# [key to cut, separator (.), Col names of 1st sub-element, Col names of 2nd sub-element]
#* - eval: Result of a Python command line. It's a python
#         dictionnary with Key as column name and Value a short command line as a string.
# For example this option can be used to get information in path (see examples below)
#* - remove_zero_ending: True or False. Remove the zeros at the end of an array
#! Warning to get a global array in a var set your key as :
#  Key : ["LETTER", first-index (start at 0), "number to last index"]
#     example:  my_key : ["Z", 0, 120]
#     Note: If the last index is the end of the array, write "end" instead of the number
#     example: my_key : ["Z", 0, "end"]
#* The following Keys are med associate keywords only usable with labelled file :
# Start Date, End Date, Subject, Experiment, Group, Box, Start Time, End Time, MSN
#! Notes: Start Date and Start Time are automaticaly added to the results.

#Here are two templates with examples
infos_col:
  subject: 6
  box: 9
  delay: 66
  step_at_endsess: 73
  sk_dur_at_endsess: 88
  reinforced_resp: 90
  reinforcers: 91
  res_during_reward_deliv: 92
  to_resp: 93
  delivery_s: 94
  to_s: 95
  shock_s: 96
  resets_number: 97
  reinforcers_max_sk_dur: 98
  mn_left_non_resp: 99
  resp_cur_sk_dur: 100
  final_sk_dur: 101
  base_value: [120,"end"]
  
infos_lab:
  subject: "Subject"
  box: "Box"
  delay: "B"
  step_at_endsess: "I"
  sk_dur_at_endsess: "X"
  reinforced_resp: ["Z", 0]
  reinforcers: ["Z", 1]
  res_during_reward_deliv: ["Z", 2]
  to_resp: ["Z", 3]
  delivery_s: ["Z", 4]
  to_s: ["Z", 5]
  shock_s: ["Z", 6]
  resets_number: ["Z", 7]
  reinforcers_max_sk_dur: ["Z", 8]
  mn_left_non_resp: ["Z", 9]
  resp_cur_sk_dur: ["Z", 10]
  final_sk_dur: ["Z", 11]
  base_value: ["Z", 30, "end"]

options:
  remove_zero_ending: True #Or False
  #https://docs.python.org/3/howto/regex.html
  filter: "shock"
  cut : [["base_value", ".", "time_stamp", "shock_step"]]
  eval: {"prog":"path_file.split('/')[-1]"}