TODO.md

TODO

modules:

[x] json [x] yaml [x] sbml [x] table [ ] markdown -> Page

exports

[x] DBSolve & SLV (DBSolve) [x] JSON + YAML [x] SBML L2 [x] SBML L3 [x] mrgsolve (R) [x] simbio (Matlab) [x] xlsx (Heta) [x] another xlsx [x] matlab [x] Julia [x] Heta-code (Heta) [x] csv [x] DOT language / Graphviz [ ] ODEs in markdown/latex/ascii [ ] rxode (R) [ ] dat (DBSolve) [x] ModelingToolkit (Julia) [ ] PGF and TikZ [x] Summary [ ] Berkley Madonna

bugs

• update libs
  • mathjs => 12.4.3 => 13.2.3 => 14.0.0
  • inquirer => 12.1.0

features

• alternative solution to substitute "pkg": Node.js 21 https://nodejs.org/api/single-executable-applications.html wait until Node.js 22 will be released
• automatic creation of modifiers in SBML
• use relative paths in logs

ideas

• allow to use const expressions in TimeSwitcher.start and TimeSwitcher.end
• support SBML's delay
• AnyUnit for zero numbers
• updating properties with one::s1.assignments.start_ 5.5;
• check and warning if core component was replaced
• remove unnecessary rules in export
• check file format for modules
• add "ignoreCompartment" property in Species
• @Dose class to use with simbiology/mrgsolve/nonmem doses
• stoichiometry as @Const and @Record
• highlight for Vim https://ezpzdev.medium.com/create-a-vim-plugin-for-your-next-programming-language-structure-and-syntax-highlight-1dc0823a6b92
• highlight for notepad++ https://npp-user-manual.org/docs/user-defined-language-system/ https://ivan-radic.github.io/udl-documentation/numbers/

remove lodash

• _get
• _set
• _omit
• _merge

Dose class

dose1 @Dose {
  target: A,
  amount: 100,
  start: 0,
  period: 12,
  repeatCount: 4,
  rate: 0.1, // for injection
  duration: 1
};
dose2 @Dose {
  target: A,
  amount: dose_amount,
  start: start1,
  period: period1,
  repeatCount: 4,
  rate: rate1 // for injection
};