diff --git a/.github/workflows/test-cases.yml b/.github/workflows/test-cases.yml index f5279b2..94a6e1b 100644 --- a/.github/workflows/test-cases.yml +++ b/.github/workflows/test-cases.yml @@ -11,10 +11,10 @@ jobs: steps: - uses: actions/checkout@v4 - - name: Use Node.js 18.x + - name: Use Node.js 20.x uses: actions/setup-node@v3 with: - node-version: 18.x + node-version: 20.x - name: Install heta-compiler run: | diff --git a/cases/0005/index0.heta b/cases/0005/index0.heta index e7d637d..748e394 100644 --- a/cases/0005/index0.heta +++ b/cases/0005/index0.heta @@ -2,5 +2,7 @@ Create reaction in Heta notation with one substrate and one product. */ +#setNS nameless {type: abstract}; + // reaction of s1 degradation r1 @Reaction {actors: s1 => p1} := k1 * s1 * comp1; diff --git a/cases/0006/index0.heta b/cases/0006/index0.heta index 816191a..b798c4b 100644 --- a/cases/0006/index0.heta +++ b/cases/0006/index0.heta @@ -2,5 +2,7 @@ Create reaction with no substrate and one product in Heta. */ +#setNS nameless {type: abstract}; + // reactions r1 @Reaction {actors: => p1} := k1 * comp1; diff --git a/cases/0006/index1.heta b/cases/0006/index1.heta index 073a821..1464c69 100644 --- a/cases/0006/index1.heta +++ b/cases/0006/index1.heta @@ -2,6 +2,8 @@ Add necessary species */ +#setNS nameless {type: abstract}; + // reactions r1 @Reaction {actors: => p1} := k1 * comp1; diff --git a/cases/0007/index0.heta b/cases/0007/index0.heta index 741806c..368ce5e 100644 --- a/cases/0007/index0.heta +++ b/cases/0007/index0.heta @@ -2,6 +2,8 @@ Create mass-action reaction in Heta notation by the stoicheometry: s1 => p1. */ +#setNS nameless {type: abstract}; + // reactions r1 @Reaction {actors: s1 => p1} := k1 * s1 * comp1; diff --git a/cases/0008/index0.heta b/cases/0008/index0.heta index 4bd25ab..4026ed9 100644 --- a/cases/0008/index0.heta +++ b/cases/0008/index0.heta @@ -2,5 +2,7 @@ Create mass-action reaction in Heta notation by the stoicheometry: 2s1 => p1. */ +#setNS nameless {type: abstract}; + // reactions r1 @Reaction {actors: 2s1 => p1} := k1 * s1^2 * comp1; diff --git a/cases/0008/index1.heta b/cases/0008/index1.heta index 7bebaaf..f2d0d50 100644 --- a/cases/0008/index1.heta +++ b/cases/0008/index1.heta @@ -2,5 +2,7 @@ Make reaction reversible */ +#setNS nameless {type: abstract}; + // reactions r1 @Reaction {actors: 2s1 <=> p1} := (k1 * s1^2 - k2 * p1) * comp2; diff --git a/cases/0009/index0.heta b/cases/0009/index0.heta index c9078be..e5bcec2 100644 --- a/cases/0009/index0.heta +++ b/cases/0009/index0.heta @@ -3,5 +3,7 @@ */ // index.heta +#setNS nameless {type: abstract}; + // reactions r1 @Reaction {actors: 2s1 => p1} := (k1 * s1^2 - k2 * p1^2) * comp1; diff --git a/cases/0010/index0.heta b/cases/0010/index0.heta index 5bad0e2..2693016 100644 --- a/cases/0010/index0.heta +++ b/cases/0010/index0.heta @@ -3,5 +3,7 @@ */ // index.heta +#setNS nameless {type: abstract}; + // reactions r1 @Reaction {actors: s1 + 2s2 + 3s3 <=> p1 + 2p2 + 3p3} := (k1 * s1 * s2^2 * s3^3 - k2 * p1 * p2^2 * p3^3) * comp1; diff --git a/cases/0012/index0.heta b/cases/0012/index0.heta index 4967bce..bf84919 100644 --- a/cases/0012/index0.heta +++ b/cases/0012/index0.heta @@ -4,6 +4,8 @@ x1 + x4 <=> x5 */ +#setNS nameless {type: abstract}; + // reactions r1 @Reaction {actors: x1 + 3x2 <=> x3} := (k1 * x1 * x2^3 - k2 * x3) * comp1; r2 @Reaction {actors: x1 + x4 <=> x5} := (k3 * x1 * x4 - k4 * x5) * comp1;