diff --git a/README.md b/README.md index deaeb92..cd84d85 100644 --- a/README.md +++ b/README.md @@ -171,6 +171,16 @@ an [MS Amanda](https://ms.imp.ac.at/?goto=msamanda) search validated with [Perco high-confidence PSM we checked if the identified peptide/peptidoform was among the top 50/100/500/1000 hits of *CandidateSearch*. We reach almost 100% coverage within the first 1000 hits of *CandidateSearch* (for reference: the whole database contained ~4 200 000 peptides or ~10 500 000 peptidoforms). +## Benchmarks + +Benchmarks of the different algorithms can be found in [benchmarks.md](benchmarks.md). + +![benchmark_hpc_1A](benchmarks/vis_A/1A.svg) + +**Figure 2:** Int32-based sparse matrix * dense matrix search using +[Eigen](https://eigen.tuxfamily.org/) generally yields the fastest computation +time on modern CPUs. + ## Known Issues [List of known issues](https://github.com/hgb-bin-proteomics/CandidateSearch/issues)