[INFO] readFASTA() potentially returns duplicate peptides

[michabirklbauer]

This

CandidateSearch/util/Database.cs

Line 170 in 994dfda

return MSAMANDA_FASTAPARSER.FASTAParser.DigestFasta(filename, settings, generateDecoys);

potentially yields/returns duplicate peptides and/or peptides that are both target and decoy. This is not really a problem, just something to be aware of!

[michabirklbauer]

Possible fix:

return MSAMANDA_FASTAPARSER.FASTAParser.DigestFasta(filename, settings, generateDecoys).Distinct().ToList();

and implement the following in

CandidateSearch/util/Database.cs

Line 8 in 994dfda

public class Peptide

:

public override bool Equals(object obj)
{
    return ToString().Equals(obj.ToString());
}