diff --git a/README.md b/README.md index 4ba517b..14f443a 100644 --- a/README.md +++ b/README.md @@ -47,6 +47,8 @@ Results can then be exported by selecting `File > Export > To Microsoft Excel… ``` python pyXlinkViewerExporter_msannika.py result.xlsx -pdb structure.pdb ``` +- **Exporting to XLMS-Tools** + XLMS-Tools uses the same file format as pyXlinkViewer, therefore the same exporter can be used! - **Exporting to XMAS (ChimeraX)** Visualization of MS Annika results works out of the box with .xlsx files exported from Proteome Discoverer. - **Exporting to PAE Viewer** @@ -202,6 +204,11 @@ Or using the Windows binary: pyXlinkViewerExporter_msannika.exe "202001216_nsp8_trypsin_XL_REP1.xlsx" "202001216_nsp8_trypsin_XL_REP2.xlsx" "202001216_nsp8_trypsin_XL_REP3.xlsx" --pdb 6yhu.pdb -o test ``` +## Export to [XLMS-Tools](https://gitlab.com/topf-lab/xlms-tools) + +[XLMS-Tools](https://gitlab.com/topf-lab/xlms-tools) uses the same input format as [pyXlinkViewer](https://github.com/BobSchiffrin/PyXlinkViewer). +Please use the [pyXlinkViewer exporter](#export-to-pyxlinkviewer-for-pymol) to export your results to XLMS-Tools format. + ## Export to [XMAS for ChimeraX](https://github.com/ScheltemaLab/ChimeraX_bundle) Visualization of crosslinks with [XMAS](https://github.com/ScheltemaLab/ChimeraX_bundle) in ChimeraX works without the need of an additional exporter, the Microsoft Excel files exported from Proteome Discoverer can be used directly as evidence files within XMAS.