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README-DEPLOY.md

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higlass-docker: Deployment

The following describes setup instructions for a linux machine running ubuntu.

Once you've connected, install docker as you would locally. (For more help with these steps, see the Docker docs.)

SSH in, and then get the file system tools Docker needs:

sudo apt-get update
sudo apt-get install -y curl \
    linux-image-extra-$(uname -r) \
    linux-image-extra-virtual

Add the Docker repo to apt-get:

sudo apt-get install apt-transport-https \
                       ca-certificates
curl -fsSL https://yum.dockerproject.org/gpg | sudo apt-key add -
# Verify the fingerprint:
apt-key finger | grep -A1 '5811 8E89 F3A9 1289 7C07  0ADB F762 2157 2C52 609D'
sudo add-apt-repository \
       "deb https://apt.dockerproject.org/repo/ \
       ubuntu-$(lsb_release -cs) \
       main"

And install docker itself:

sudo apt-get update
sudo apt-get -y install docker-engine

Finally, call our script to setup all the containers.

curl https://raw.githubusercontent.com/hms-dbmi/higlass-docker/master/start_production.sh | bash

When you're done with the instance, clean up:

aws ec2 terminate-instances --instance-id $INSTANCE_ID
# Wait while instance terminates, and then
aws ec2 delete-security-group --group-id $GROUP_ID
aws ec2 delete-key-pair --key-name $KEY_NAME
rm ~/$KEY_NAME.pem