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#19 add gender identity, individual pronouns, and sex assigned at birth #53

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#19 add gender identity, individual pronouns, and sex assigned at birth #53

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dab1df6
#45 restored Patient-beneelong-anne and removed language from Patient…
heathfrankel Sep 25, 2024
a9fd6c0
#19 generated Patient resources with gender identity, pronouns and se…
heathfrankel Sep 25, 2024
7ceff5c
#19 Updated CSV2Patient.map to support additional columns individual_…
heathfrankel Sep 25, 2024
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22 changes: 22 additions & 0 deletions Sparked.Csv2FhirMapping/Maps/CSV2Patient.map
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Original file line number Diff line number Diff line change
Expand Up @@ -390,6 +390,17 @@ group ToPatient(source src : PatientCSV, target tgt : Patient) {
};
};

// individual_genderIdentity_value_text
src.individual_genderIdentity_value_text as s_text where length() > 0 and src.individual_genderIdentity_value_code.length() = 0 -> tgt.extension as t_extension first then {
s_text -> t_extension.url = 'http://hl7.org/fhir/StructureDefinition/individual-genderIdentity',
t_extension.extension as t_ext_value first then {
s_text -> t_ext_value.url = 'value',
t_ext_value.value = create('CodeableConcept') as t_value then {
s_text -> t_value.text = s_text;
};
};
};

// individual_pronouns_value_code
src.individual_pronouns_value_code as s_individual_pronouns where length() > 0 -> tgt.extension as t_extension first then {
s_individual_pronouns -> t_extension.url = 'http://hl7.org/fhir/StructureDefinition/individual-pronouns',
Expand All @@ -403,6 +414,17 @@ group ToPatient(source src : PatientCSV, target tgt : Patient) {
};
};

// individual_pronouns_value_text : TODO
src.individual_pronouns_value_text as s_text where length() > 0 and src.individual_pronouns_value_code.length() = 0 -> tgt.extension as t_extension first then {
s_text -> t_extension.url = 'http://hl7.org/fhir/StructureDefinition/individual-pronouns',
t_extension.extension as t_ext_value first then {
s_text -> t_ext_value.url = 'value',
t_ext_value.value = create('CodeableConcept') as t_value then {
s_text -> t_value.text = s_text;
};
};
};

// individual_recordedSexOrGender_type_code
src.individual_recordedSexOrGender_type_code as s_recordedSexOrGender_type where length() > 0 -> tgt.extension as t_extension first then {
s_recordedSexOrGender_type -> t_extension.url = 'http://hl7.org/fhir/StructureDefinition/individual-recordedSexOrGender',
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63 changes: 63 additions & 0 deletions generated/Patient-archibald-dante.json
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Expand Up @@ -14,6 +14,69 @@
"code": "4",
"display": "Neither Aboriginal nor Torres Strait Islander origin"
}
},
{
"extension": [
{
"url": "value",
"valueCodeableConcept": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "446151000124109",
"display": "Identifies as male gender (finding)"
}
]
}
}
],
"url": "http://hl7.org/fhir/StructureDefinition/individual-genderIdentity"
},
{
"extension": [
{
"url": "value",
"valueCodeableConcept": {
"coding": [
{
"system": "http://loinc.org",
"code": "LA29518-0",
"display": "he/him/his/his/himself"
}
]
}
}
],
"url": "http://hl7.org/fhir/StructureDefinition/individual-pronouns"
},
{
"extension": [
{
"url": "type",
"valueCodeableConcept": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "76689-9",
"display": "Sex Assigned At Birth"
}
]
}
},
{
"url": "value",
"valueCodeableConcept": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "male",
"display": "Male"
}
]
}
}
],
"url": "http://hl7.org/fhir/StructureDefinition/individual-recordedSexOrGender"
}
],
"identifier": [
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46 changes: 46 additions & 0 deletions generated/Patient-baldry-terence-emile.json
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Expand Up @@ -14,6 +14,52 @@
"code": "1",
"display": "Aboriginal but not Torres Strait Islander origin"
}
},
{
"extension": [
{
"url": "value",
"valueCodeableConcept": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "446151000124109",
"display": "Identifies as male gender (finding)"
}
]
}
}
],
"url": "http://hl7.org/fhir/StructureDefinition/individual-genderIdentity"
},
{
"extension": [
{
"url": "type",
"valueCodeableConcept": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "1515311000168102",
"display": "Biological sex at birth"
}
]
}
},
{
"url": "value",
"valueCodeableConcept": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "248153007",
"display": "Male"
}
]
}
}
],
"url": "http://hl7.org/fhir/StructureDefinition/individual-recordedSexOrGender"
}
],
"identifier": [
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19 changes: 19 additions & 0 deletions generated/Patient-baldwin-dinah.json
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Expand Up @@ -6,6 +6,25 @@
"http://hl7.org.au/fhir/core/StructureDefinition/au-core-patient"
]
},
"extension": [
{
"extension": [
{
"url": "value",
"valueCodeableConcept": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "UNK",
"display": "Unknown"
}
]
}
}
],
"url": "http://hl7.org/fhir/StructureDefinition/individual-genderIdentity"
}
],
"identifier": [
{
"extension": [
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34 changes: 34 additions & 0 deletions generated/Patient-ballantyne-sandy-choy.json
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Expand Up @@ -14,6 +14,40 @@
"code": "2",
"display": "Torres Strait Islander but not Aboriginal origin"
}
},
{
"extension": [
{
"url": "value",
"valueCodeableConcept": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "33791000087105",
"display": "Identifies as gender nonbinary"
}
]
}
}
],
"url": "http://hl7.org/fhir/StructureDefinition/individual-genderIdentity"
},
{
"extension": [
{
"url": "value",
"valueCodeableConcept": {
"coding": [
{
"system": "http://loinc.org",
"code": "LA29518-0",
"display": "he/him/his/his/himself"
}
]
}
}
],
"url": "http://hl7.org/fhir/StructureDefinition/individual-pronouns"
}
],
"identifier": [
Expand Down
63 changes: 63 additions & 0 deletions generated/Patient-banks-jamila-angie.json
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Original file line number Diff line number Diff line change
Expand Up @@ -14,6 +14,69 @@
"code": "4",
"display": "Neither Aboriginal nor Torres Strait Islander origin"
}
},
{
"extension": [
{
"url": "value",
"valueCodeableConcept": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "33791000087105",
"display": "Identifies as gender nonbinary"
}
]
}
}
],
"url": "http://hl7.org/fhir/StructureDefinition/individual-genderIdentity"
},
{
"extension": [
{
"url": "value",
"valueCodeableConcept": {
"coding": [
{
"system": "http://loinc.org",
"code": "LA29519-8",
"display": "she/her/her/hers/herself"
}
]
}
}
],
"url": "http://hl7.org/fhir/StructureDefinition/individual-pronouns"
},
{
"extension": [
{
"url": "type",
"valueCodeableConcept": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "76689-9",
"display": "Sex Assigned At Birth"
}
]
}
},
{
"url": "value",
"valueCodeableConcept": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "female",
"display": "Female"
}
]
}
}
],
"url": "http://hl7.org/fhir/StructureDefinition/individual-recordedSexOrGender"
}
],
"identifier": [
Expand Down
13 changes: 0 additions & 13 deletions generated/Patient-baratz-toni.json
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Expand Up @@ -162,18 +162,5 @@
"postalCode": "6054",
"country": "AU"
}
],
"communication": [
{
"language": {
"coding": [
{
"system": "urn:ietf:bcp:47",
"code": "yub"
}
],
"text": "Yugambal"
}
}
]
}
34 changes: 34 additions & 0 deletions generated/Patient-bassett-imogene-betsy.json
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Expand Up @@ -14,6 +14,40 @@
"code": "2",
"display": "Torres Strait Islander but not Aboriginal origin"
}
},
{
"extension": [
{
"url": "value",
"valueCodeableConcept": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "UNK",
"display": "Unknown"
}
]
}
}
],
"url": "http://hl7.org/fhir/StructureDefinition/individual-genderIdentity"
},
{
"extension": [
{
"url": "value",
"valueCodeableConcept": {
"coding": [
{
"system": "http://loinc.org",
"code": "LA29519-8",
"display": "she/her/her/hers/herself"
}
]
}
}
],
"url": "http://hl7.org/fhir/StructureDefinition/individual-pronouns"
}
],
"identifier": [
Expand Down
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