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index.html
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<!DOCTYPE html>
<html lang="en">
<head>
<!-- Basic -->
<meta charset="utf-8" />
<meta http-equiv="X-UA-Compatible" content="IE=edge" />
<!-- Mobile Metas -->
<meta
name="viewport"
content="width=device-width, minimum-scale=1.0, maximum-scale=1.0, user-scalable=no"
/>
<!-- Site Metas -->
<title>Hossam Zaki</title>
<meta name="keywords" content="" />
<meta name="description" content="" />
<meta name="author" content="" />
<!-- Site Icons -->
<script
src="https://kit.fontawesome.com/0c72cb7ad1.js"
crossorigin="anonymous"
></script>
<!-- Bootstrap CSS -->
<link rel="stylesheet" href="css/bootstrap.min.css" />
<!-- Site CSS -->
<link rel="stylesheet" href="style.css" />
<!-- Responsive CSS -->
<link rel="stylesheet" href="css/responsive.css" />
<!-- Custom CSS -->
<link rel="stylesheet" href="css/custom.css" />
<script src="js/modernizr.js"></script>
<!-- Modernizr -->
<!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/libs/html5shiv/3.7.0/html5shiv.js"></script>
<script src="https://oss.maxcdn.com/libs/respond.js/1.4.2/respond.min.js"></script>
<![endif]-->
</head>
<body id="page-top" class="politics_version">
<!-- LOADER -->
<div id="preloader">
<div id="main-ld">
<div id="loader"></div>
</div>
</div>
<!-- end loader -->
<!-- END LOADER -->
<!-- Navigation -->
<nav class="navbar navbar-expand-lg navbar-dark fixed-top" id="mainNav">
<div class="container">
<a class="navbar-brand js-scroll-trigger" href="#page-top"> </a>
<button
class="navbar-toggler navbar-toggler-right"
type="button"
data-toggle="collapse"
data-target="#navbarResponsive"
aria-controls="navbarResponsive"
aria-expanded="false"
aria-label="Toggle navigation"
>
Menu
<i class="fa fa-bars"></i>
</button>
<div class="collapse navbar-collapse" id="navbarResponsive">
<ul class="navbar-nav text-uppercase ml-auto">
<li class="nav-item">
<a class="nav-link js-scroll-trigger active" href="#home">Home</a>
</li>
<li class="nav-item">
<a class="nav-link js-scroll-trigger" href="#about">About me</a>
</li>
<li class="nav-item">
<a class="nav-link js-scroll-trigger" href="#services"
>Experience</a
>
</li>
<li class="nav-item">
<a class="nav-link js-scroll-trigger" href="#portfolio"
>Projects</a
>
</li>
<li class="nav-item">
<a class="nav-link js-scroll-trigger" href="#contact"
>Contact Me</a
>
</li>
</ul>
</div>
</div>
</nav>
<section
id="home"
class="main-banner parallaxie"
style="background: url('uploads/background.JPG')"
>
<div class="heading">
<h1>hello i'm Hossam</h1>
<p>
"The people who are crazy enough to think they can change the world,
<br />
are the ones who do."
</p>
<h3 class="cd-headline clip is-full-width">
<span>></span>
<span class="cd-words-wrapper">
<b class="is-visible">Researcher</b>
<b>Developer</b>
<b>Entrepreneur</b>
<b>Photographer</b>
<b>Liverpool Fan</b>
</span>
</h3>
</div>
</section>
<svg
id="clouds"
class="hidden-xs"
xmlns="http://www.w3.org/2000/svg"
version="1.1"
width="100%"
height="100"
viewBox="0 0 85 100"
preserveAspectRatio="none"
>
<path
d="M-5 100 Q 0 20 5 100 Z
M0 100 Q 5 0 10 100
M5 100 Q 10 30 15 100
M10 100 Q 15 10 20 100
M15 100 Q 20 30 25 100
M20 100 Q 25 -10 30 100
M25 100 Q 30 10 35 100
M30 100 Q 35 30 40 100
M35 100 Q 40 10 45 100
M40 100 Q 45 50 50 100
M45 100 Q 50 20 55 100
M50 100 Q 55 40 60 100
M55 100 Q 60 60 65 100
M60 100 Q 65 50 70 100
M65 100 Q 70 20 75 100
M70 100 Q 75 45 80 100
M75 100 Q 80 30 85 100
M80 100 Q 85 20 90 100
M85 100 Q 90 50 95 100
M90 100 Q 95 25 100 100
M95 100 Q 100 15 105 100 Z"
></path>
</svg>
<div id="about" class="section wb">
<div class="container">
<div class="row">
<div class="col-md-6">
<div class="message-box">
<h2>About Hossam.</h2>
<p>
I am a third-year student at Brown University double majoring in
Computer Science and Biology. My goal is to combine Computer
Science and Biology to make ground-breaking innovations in
medicine.
</p>
<p>
Outside of my studies, I am an avid Liverpool Fan, Teacher,
Book-Lover, Music-Creator and Mentor
</p>
<a
href="assets/files/Resume.pdf"
download="Hossam_Zaki_Resume"
class="sim-btn btn-hover-new"
data-text="Download CV"
><span>Download CV</span></a
>
</div>
<!-- end messagebox -->
</div>
<!-- end col -->
<div class="col-md-6">
<div class="right-box-pro wow fadeIn">
<img
src="uploads/IMG_5876 (2).jpg"
alt=""
class="img-fluid img-rounded"
/>
</div>
<!-- end media -->
</div>
<!-- end col -->
</div>
<!-- end row -->
</div>
<!-- end container -->
</div>
<!-- end section -->
<div id="services" class="section lb">
<div class="container">
<div class="section-title text-left">
<h3>Where have I been?</h3>
</div>
<!-- end title -->
<div class="row">
<div class="col-md-4">
<div class="services-inner-box">
<div class="ser-icon">
<i class="fas fa-dna"></i>
</div>
<h2>Broad Institute of MIT and Harvard</h2>
<p>
I was selected as a participant in the highly selective Broad
Summer Research Program. Working with Dr. Rameen Beroukhim and
Dr. Simona Dalin, I characterized structural variants in RAD51B,
a DNA repair gene correlated to tumor growth.
</p>
</div>
</div>
<!-- end col -->
<div class="col-md-4">
<div class="services-inner-box">
<div class="ser-icon">
<i class="fas fa-microscope"></i>
</div>
<h2>Brown University</h2>
<p>
I have worked in Dr. Gary Wessel's lab since the summer of 2017.
Since then, I have worked on projects including researching the
Sea Star Wasting Disease, as well as a transcription factor
search in the transcriptome of the Sea Urchin
</p>
</div>
</div>
<!-- end col -->
<div class="col-md-4">
<div class="services-inner-box">
<div class="ser-icon">
<i class="fas fa-database"></i>
</div>
<h2>Protein Data Bank of Europe</h2>
<p>
Worked in the PDBe developing an algorithm that would find
similar protein structures and a particular protein family
</p>
</div>
</div>
<!-- end col -->
<div class="col-md-4">
<div class="services-inner-box">
<div class="ser-icon">
<i class="fab fa-google"></i>
</div>
<h2>Google</h2>
<p>
As a Software Product Sprint participant, I and 3 other
developers made a real time voting app using Java, HTML/CSS and
JavaScript
</p>
</div>
</div>
<!-- end col -->
</div>
<!-- end row -->
</div>
<!-- end container -->
</div>
<!-- end section -->
<div id="portfolio" class="section lb">
<div class="container">
<div class="section-title text-left">
<h3>What have I been doing?</h3>
</div>
<!-- end title -->
<div class="gallery-menu row">
<div class="col-md-12">
<div class="button-group filter-button-group text-left">
<button class="active" data-filter="*">All</button>
<button data-filter=".gal_a">Computational Biology</button>
<button data-filter=".gal_b">Software Engineering</button>
<button data-filter=".gal_c">Data Science</button>
</div>
</div>
</div>
<div class="gallery-list row">
<div class="col-md-4 col-sm-6 gallery-grid gal_b">
<div class="gallery-single fix">
<section>
<h3>Apollo - The Speech-to-Text Note Taking App</h3>
<p>
Apollo is an application where Doctors can take notes without
ever having to touch their computer. We used Google Speech
Recognition to transcribe visits and the Knuth-Morris-Pratt
algorithm to extract important keywords. Fully encrypted using
Google Tink. Also we conducted user tests with medical
students at Brown Med, and doctors at Rhode Island Hospital
</p>
<ul
class="icons"
style="font-size: 25px"
style="align-self: center"
>
<li>
<a
target="_blank"
href="https://github.com/hossam-zaki/apollo"
><i class="fa fa-github-alt" aria-hidden="true"></i>
</a>
<a target="_blank" href="http://apollohealth.herokuapp.com/"
><i class="fa fa-link"></i>
</a>
</li>
</ul>
</section>
</div>
</div>
<div class="col-md-4 col-sm-6 gallery-grid gal_c gal_a">
<div class="gallery-single fix">
<section>
<h3>Computational Analysis of Sea Urchin Transcriptome</h3>
<p>
Using data from the Sea Urchin Transcriptome, I developed
pipelines to search for motifs in genetic sequences using the
Knuth-Morris-Pratt algorithm and global/local alignment. I am
also building a machine learning model to find more accurate
and motifs using CHIP-Seq data.
</p>
<ul
class="icons"
style="font-size: 25px"
style="align-self: center"
>
<li>
<a
target="_blank"
href="https://github.com/hossam-zaki/Sea_Urchin_Transcriptome_Analysis"
><i class="fa fa-github-alt" aria-hidden="true"></i>
</a>
</li>
</ul>
</section>
</div>
</div>
<div class="col-md-4 col-sm-6 gallery-grid gal_a gal_c">
<div class="gallery-single fix">
<section>
<h3>X-Ray Classification</h3>
<p>
Using X-Ray data from the NIH and COVID-19 X-Rays from NCBI, I
built a neural network which achieved an average of 65% false
positive rate across all of the labels using a simplistic
model of only a few layers
</p>
<ul
class="icons"
style="font-size: 25px"
style="align-self: center"
>
<li>
<a
target="_blank"
href="https://github.com/hossam-zaki/X-Ray-Classification"
><i class="fa fa-github-alt" aria-hidden="true"></i>
</a>
</li>
</ul>
</section>
</div>
</div>
<div class="col-md-4 col-sm-6 gallery-grid gal_b">
<div class="gallery-single fix">
<section>
<h3>Courier</h3>
<p>
In light of COVID-19, we wanted to connect neighbors together
when they need each other the most. Using this app, neighbors
can request and accept services for their fellow neighbors.
Used a KDTree to find K-Nearest-Neighbors. Built using Python,
Flask, CSS, MongoDB, and Google Geolocation API
</p>
<ul
class="icons"
style="font-size: 25px"
style="align-self: center"
>
<li>
<a target="_blank" href="https://www.couriernear.us/home"
><i class="fa fa-link"></i>
</a>
</li>
</ul>
</section>
</div>
</div>
<div class="col-md-4 col-sm-6 gallery-grid gal_b">
<div class="gallery-single fix">
<section>
<h3>College Boss</h3>
<p>
Developed a website and online services to help students
succeed in the college admissions process. Developed using
Python, Flask, Bootstrap, Node.js, and Stripe
</p>
<ul
class="icons"
style="font-size: 25px"
style="align-self: center"
>
<li>
<a target="_blank" href="https://www.realcollegeboss.com/"
><i class="fa fa-link"></i>
</a>
</li>
</ul>
</section>
</div>
</div>
<div class="col-md-4 col-sm-6 gallery-grid gal_a">
<div class="gallery-single fix">
<section>
<h3>COVID-19 Sequence Similarity</h3>
<p>
This project was built to compare the sequence of COVID-19
with several other viruses. We used Global and Local alignment
to generate a similarity score, then used Knuth-Morris-Pratt
to test several motifs in these sequences
</p>
<ul
class="icons"
style="font-size: 25px"
style="align-self: center"
>
<li>
<a
target="_blank"
href="https://github.com/hossam-zaki/COVID19_Sequence_Analysis"
><i class="fa fa-github-alt" aria-hidden="true"></i>
</a>
</li>
</ul>
</section>
</div>
</div>
<div class="col-md-4 col-sm-6 gallery-grid gal_a">
<div class="gallery-single fix">
<section>
<h3>Protein Structure Similarity</h3>
<p>
This project was during my internship at the Protein Data Bank
of Europe. I developed a pipeline to compare different protein
structures in a particular protein family. I used Python, C++,
SQL, and PyMol for the superposition of the structures, then
hierarchical clustering techniques to detect protein
similarity
</p>
<ul
class="icons"
style="font-size: 25px"
style="align-self: center"
>
<li>
<a
target="_blank"
href="https://wwwdev.ebi.ac.uk/pdbe/pdbe-kb/proteins/P00698"
><i class="fa fa-link" aria-hidden="true"></i>
</a>
</li>
</ul>
</section>
</div>
</div>
<div class="col-md-4 col-sm-6 gallery-grid gal_c gal_a">
<div class="gallery-single fix">
<section>
<h3>Structural Variant Characterization in tumorigenesis</h3>
<p>
This project was done during my time at the Broad Institute of
Harvard and MIT. Using data from ICGC, PCAWG, TCGA, Ensembl,
and Uniprot, I characterized structural variants in DNA Repair
Genes involved in tumorigenesis. Utilized Python, R, and
Sklearn
</p>
<ul
class="icons"
style="font-size: 25px"
style="align-self: center"
>
<li>
<a
target="_blank"
href="https://github.com/hossam-zaki/BSRP2020"
><i class="fa fa-github-alt" aria-hidden="true"></i>
</a>
</li>
</ul>
</section>
</div>
</div>
<div class="col-md-4 col-sm-6 gallery-grid gal_b">
<div class="gallery-single fix">
<section>
<h3>Real Time Voting App</h3>
<p>
In Google's Software Product Sprint, myself and 3 other
developers built a real-time voting app using Java, Google
Cloud, and HTML/CSS/JS. Built NLP Algorithm to find similar
questions on quora
</p>
<ul
class="icons"
style="font-size: 25px"
style="align-self: center"
>
<li>
<a
target="_blank"
href="https://github.com/swissknife007/RealTimeVotingApp"
><i class="fa fa-github-alt" aria-hidden="true"></i>
</a>
</li>
</ul>
</section>
</div>
</div>
</div>
</div>
</div>
<div class="section" id="skills">
<div class="container">
<h2 class="title">What can I do?</h2>
<p>Relative to Java and Python</p>
<div>
<div class="row">
<div class="col-md-6" style="padding-bottom: 48px">
<div class="progress-container progress-info">
<span class="progress-badge">Java</span>
<div class="progress" style="height: 20px; color: black">
<div
class="progress-bar bg-dark"
role="progressbar"
aria-valuenow="100"
aria-valuemin="0"
aria-valuemax="100"
style="width: 100%"
>
<span class="progress-value">100%</span>
</div>
</div>
</div>
</div>
<div class="col-md-6" style="padding-bottom: 48px">
<div class="progress-container progress-info">
<span class="progress-badge">Python</span>
<div class="progress" style="height: 20px; color: black">
<div
class="progress-bar bg-dark"
role="progressbar"
aria-valuenow="100"
aria-valuemin="0"
aria-valuemax="100"
style="width: 100%"
>
<span class="progress-value">100%</span>
</div>
</div>
</div>
</div>
<div class="col-md-6" style="padding-bottom: 48px">
<div class="progress-container progress-info">
<span class="progress-badge">Flutter (Dart)</span>
<div class="progress" style="height: 20px; color: black">
<div
class="progress-bar bg-dark"
role="progressbar"
aria-valuenow="80"
aria-valuemin="0"
aria-valuemax="100"
style="width: 80%"
>
<span class="progress-value">80%</span>
</div>
</div>
</div>
</div>
<div class="col-md-6" style="padding-bottom: 48px">
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