From b663df16ee467efc4e2ca82305fbf94fbda0b0de Mon Sep 17 00:00:00 2001 From: emquardokus <47257000+emquardokus@users.noreply.github.com> Date: Fri, 6 Sep 2024 16:21:19 -0400 Subject: [PATCH 1/2] Update popv.csv Remove row 88 hepatocyte mapping to heart --- crosswalking-tables/popv.csv | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/crosswalking-tables/popv.csv b/crosswalking-tables/popv.csv index db0ba85..cbe1291 100644 --- a/crosswalking-tables/popv.csv +++ b/crosswalking-tables/popv.csv @@ -85,7 +85,6 @@ eye,UBERON:0000970,surface ectodermal cell,PV:0000073,surface ectodermal cell,CL heart,UBERON:0000948,cardiac endothelial cell,PV:0000074,cardiac endothelial cell,CL:0010008,skos:exactMatch heart,UBERON:0000948,cardiac muscle cell,PV:0000075,cardiac muscle cell,CL:0000746,skos:exactMatch heart,UBERON:0000948,fibroblast of cardiac tissue,PV:0000076,fibroblast of cardiac tissue,CL:0002548,skos:exactMatch -heart,UBERON:0000948,hepatocyte,PV:0000077,hepatocyte,CL:0000182,skos:exactMatch heart,UBERON:0000948,macrophage,PV:0000078,macrophage,CL:0000235,skos:exactMatch heart,UBERON:0000948,smooth muscle cell,PV:0000079,smooth muscle cell,CL:0000192,skos:exactMatch large intestine,UBERON:0000059,B cell,PV:0000080,B cell,CL:0000236,skos:exactMatch @@ -410,4 +409,4 @@ uterus,UBERON:0000995,macrophage,PV:0000398,macrophage,CL:0000235,skos:exactMatc uterus,UBERON:0000995,mature NK T cell,PV:0000399,mature NK T cell,CL:0000814,skos:exactMatch uterus,UBERON:0000995,myometrial cell,PV:0000400,myometrial cell,CL:0002366,skos:exactMatch uterus,UBERON:0000995,pericyte,PV:0000401,pericyte,CL:0000669,skos:exactMatch -uterus,UBERON:0000995,vascular associated smooth muscle cell,PV:0000402,vascular associated smooth muscle cell,CL:0000359,skos:exactMatch \ No newline at end of file +uterus,UBERON:0000995,vascular associated smooth muscle cell,PV:0000402,vascular associated smooth muscle cell,CL:0000359,skos:exactMatch From e8440bcf176e6797fa501068f2483704115c91a9 Mon Sep 17 00:00:00 2001 From: emquardokus <47257000+emquardokus@users.noreply.github.com> Date: Fri, 6 Sep 2024 16:24:09 -0400 Subject: [PATCH 2/2] Update popv.csv remove DOI, update v1.1 DRAFT will re-release in 8th HRA release --- crosswalking-tables/popv.csv | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/crosswalking-tables/popv.csv b/crosswalking-tables/popv.csv index cbe1291..861bb71 100644 --- a/crosswalking-tables/popv.csv +++ b/crosswalking-tables/popv.csv @@ -5,9 +5,9 @@ Author ORCID(s):,0000-0001-7655-4833,,,,, Reviewer(s):,"Bruce Herr II, Katy Borner",,,,, Reviewer ORCID(s):,"0000-0002-6703-7647, 0000-0002-3321-6137",,,,, General Publication(s):,"https://github.com/YosefLab/PopV, 1. Ergen C, Xing G, Xu C, Jayasuriya M, McGeever E, Pisco AO, Streets A, Yosef N. Consensus prediction of cell type labels with popV. bioRxiv [Internet]. 2023 Jan 1;2023.08.18.553912. Available from: http://biorxiv.org/content/early/2023/08/21/2023.08.18.553912.abstract",,,,, -Data DOI:,https://doi.org/10.48539/HBM978.STZB.569,,,,, -Date:,15-Jun-24,,,,, -Version number:,v1.0,,,,, +Data DOI: +Date: +Version number:,v1.1-DRAFT Organ_Level,Organ_ID,Annotation_Label,Annotation_Label_ID,CL_Label,CL_ID,CL_Match blood,UBERON:0000178,CD141-positive myeloid dendritic cell,PV:0000001,CD141-positive myeloid dendritic cell,CL:0002394,skos:exactMatch blood,UBERON:0000178,"CD4-positive, alpha-beta memory T cell",PV:0000002,"CD4-positive, alpha-beta memory T cell",CL:0000897,skos:exactMatch