From 2a2f2c7cae7f057217875f4089abba30cc9455c0 Mon Sep 17 00:00:00 2001 From: jonca79 <54137490+jonca79@users.noreply.github.com> Date: Tue, 19 Nov 2024 08:56:02 +0100 Subject: [PATCH] fix(juli_filter): correct parameter name --- workflow/scripts/filter_juli.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflow/scripts/filter_juli.py b/workflow/scripts/filter_juli.py index c21565f..ee26aa5 100644 --- a/workflow/scripts/filter_juli.py +++ b/workflow/scripts/filter_juli.py @@ -30,7 +30,7 @@ def filter_fusions(in_file, out_file, cosmic_filter, discordant_limit, split_rea log = snakemake.log_fmt_shell(stdout=False, stderr=True) in_file = open(snakemake.input.fusions) out_file = open(snakemake.output.fusions, "w") - cosmic_filter = snakemake.params.cosmic + cosmic_filter = snakemake.params.cosmic_filter discordant_limit = int(snakemake.params.discordant_limit) split_reads_limit = int(snakemake.params.split_reads_limit) total_support_limit = int(snakemake.params.total_support_limit)