diff --git a/.github/workflows/compatibility.yaml b/.github/workflows/compatibility.yaml index a48977c..4422719 100644 --- a/.github/workflows/compatibility.yaml +++ b/.github/workflows/compatibility.yaml @@ -20,10 +20,10 @@ jobs: id: branch-name uses: tj-actions/branch-names@v5.2 - uses: actions/checkout@v3 - - name: Set up Python 3.8 + - name: Set up Python 3.11 uses: actions/setup-python@v3 with: - python-version: 3.8 + python-version: 3.11 - name: Install requirements.txt run: | pip install -r requirements.txt diff --git a/.github/workflows/lint.yaml b/.github/workflows/lint.yaml index 1b38ecb..1a93fab 100644 --- a/.github/workflows/lint.yaml +++ b/.github/workflows/lint.yaml @@ -17,10 +17,10 @@ jobs: runs-on: ubuntu-latest steps: - uses: actions/checkout@v3 - - name: Set up Python 3.8 + - name: Set up Python 3.11 uses: actions/setup-python@v3 with: - python-version: 3.8 + python-version: 3.11 - name: Add conda to system path run: | echo $CONDA/bin >> $GITHUB_PATH diff --git a/.github/workflows/snakemake-dry-run.yaml b/.github/workflows/snakemake-dry-run.yaml index 8b7140d..301434e 100644 --- a/.github/workflows/snakemake-dry-run.yaml +++ b/.github/workflows/snakemake-dry-run.yaml @@ -17,10 +17,10 @@ jobs: runs-on: ubuntu-latest steps: - uses: actions/checkout@v3 - - name: Set up Python 3.8 + - name: Set up Python 3.11 uses: actions/setup-python@v3 with: - python-version: 3.8 + python-version: 3.11 - name: Add conda to system path run: | echo $CONDA/bin >> $GITHUB_PATH diff --git a/requirements.txt b/requirements.txt index fee3500..d4cb181 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,8 +1,6 @@ drmaa==0.7.9 -hydra-genetics==0.15.0 +hydra-genetics==1.14.0 jinja2==3.0.1 pandas>=1.3.1 -pulp<2.8.0 singularity==3.0.0 -snakemake>=7.13.0,<8 -tabulate<0.9.0 +snakemake>=8,<9