From 41612b82e55ec6aec53bf46520f8fc9184b9f3b1 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?P=C3=A1draic=20Corcoran?=
 <padraicc@users.noreply.github.com>
Date: Mon, 9 Dec 2024 16:32:05 +0100
Subject: [PATCH] fix(pbmarkdup): redirect long info correctly

---
 workflow/rules/pbmarkdup.smk | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/workflow/rules/pbmarkdup.smk b/workflow/rules/pbmarkdup.smk
index 24d9192..7e3290a 100644
--- a/workflow/rules/pbmarkdup.smk
+++ b/workflow/rules/pbmarkdup.smk
@@ -32,4 +32,4 @@ rule pbmarkdup:
     shell:
         "pbmarkdup --num-threads {threads} "
         "{input.bam} "
-        "{output.bam} --log-level INFO 2> {log}"
+        "{output.bam} --log-level INFO &> {log}"