diff --git a/.tests/integration/units.tsv b/.tests/integration/units.tsv index cc8f991..1a3ba94 100644 --- a/.tests/integration/units.tsv +++ b/.tests/integration/units.tsv @@ -1,3 +1,3 @@ -sample platform barcode type flowcell lane fastq1 fastq2 adapter -HD832.HES45 Illumina AAAA+CCCC T 1 L001 fastq/HD827sonic_testing1_R1.fastq.gz fastq/HD827sonic_testing1_R2.fastq.gz ACGT -HD832.HES45 Illumina AAAA+TTTT R 1 L001 fastq/HD827sonic_testing2_R1.fastq.gz fastq/HD827sonic_testing2_R2.fastq.gz ACGT +sample platform barcode type machine flowcell lane fastq1 fastq2 adapter +HD832.HES45 Illumina AAAA+CCCC T NDX550220 1 L001 fastq/HD827sonic_testing1_R1.fastq.gz fastq/HD827sonic_testing1_R2.fastq.gz ACGT +HD832.HES45 Illumina AAAA+TTTT R NDX550220 1 L001 fastq/HD827sonic_testing2_R1.fastq.gz fastq/HD827sonic_testing2_R2.fastq.gz ACGT diff --git a/workflow/rules/common.smk b/workflow/rules/common.smk index d989a80..4ef5dcf 100644 --- a/workflow/rules/common.smk +++ b/workflow/rules/common.smk @@ -40,6 +40,7 @@ validate(units, schema="../schemas/units.schema.yaml") ### Set wildcard constraints + wildcard_constraints: sample="|".join(samples.index), unit="N|T|R",