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Error:
ERROR - Error reading page 'softwares.md': too many values to unpack (expected 2)
Traceback (most recent call last):
File "/home/jonas/Snakemake/venv/bin/mkdocs", line 8, in
sys.exit(cli())
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/click/core.py", line 1130, in call
return self.main(args, **kwargs)
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/click/core.py", line 1055, in main
rv = self.invoke(ctx)
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/click/core.py", line 1657, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/click/core.py", line 1404, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/click/core.py", line 760, in invoke
return __callback(args, **kwargs)
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/mkdocs/main.py", line 234, in serve_command
serve.serve(dev_addr=dev_addr, livereload=livereload, watch=watch, **kwargs)
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/mkdocs/commands/serve.py", line 83, in serve
builder(config)
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/mkdocs/commands/serve.py", line 76, in builder
build(config, live_server=live_server, dirty=dirty)
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/mkdocs/commands/build.py", line 308, in build
_populate_page(file.page, config, files, dirty)
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/mkdocs/commands/build.py", line 177, in _populate_page
page.markdown = config.plugins.run_event(
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/mkdocs/plugins.py", line 520, in run_event
result = method(item, **kwargs)
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/mkdocs_snakemake_rule_plugin/plugin.py", line 22, in on_page_markdown
return self.generator.get_markdown(markdown, **kwargs)
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/mkdocs_snakemake_rule_plugin/markdown.py", line 279, in get_markdown
new_markdown = markdown_table(self.config_extracted_rules[rule_name]['source'],
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/mkdocs_snakemake_rule_plugin/markdown.py", line 162, in markdown_table
variables = get_input_variabels(rule_source,
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/mkdocs_snakemake_rule_plugin/markdown.py", line 99, in get_input_variabels
key, value = re.split("[ ]=[ ]", line)
ValueError: too many values to unpack (expected 2)
The text was updated successfully, but these errors were encountered:
The mkdocs-snakemake-rule-plugin can not handle the following input variable when creating the documentation:
rule glnexus:
input:
gvcfs=expand("snv_indels/deeptrio/{{sample}}_{{type}}/{trio_member}.g.vcf", trio_member=["child", "parent1", "parent2"]),
Error:
ERROR - Error reading page 'softwares.md': too many values to unpack (expected 2)
Traceback (most recent call last):
File "/home/jonas/Snakemake/venv/bin/mkdocs", line 8, in
sys.exit(cli())
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/click/core.py", line 1130, in call
return self.main(args, **kwargs)
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/click/core.py", line 1055, in main
rv = self.invoke(ctx)
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/click/core.py", line 1657, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/click/core.py", line 1404, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/click/core.py", line 760, in invoke
return __callback(args, **kwargs)
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/mkdocs/main.py", line 234, in serve_command
serve.serve(dev_addr=dev_addr, livereload=livereload, watch=watch, **kwargs)
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/mkdocs/commands/serve.py", line 83, in serve
builder(config)
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/mkdocs/commands/serve.py", line 76, in builder
build(config, live_server=live_server, dirty=dirty)
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/mkdocs/commands/build.py", line 308, in build
_populate_page(file.page, config, files, dirty)
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/mkdocs/commands/build.py", line 177, in _populate_page
page.markdown = config.plugins.run_event(
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/mkdocs/plugins.py", line 520, in run_event
result = method(item, **kwargs)
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/mkdocs_snakemake_rule_plugin/plugin.py", line 22, in on_page_markdown
return self.generator.get_markdown(markdown, **kwargs)
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/mkdocs_snakemake_rule_plugin/markdown.py", line 279, in get_markdown
new_markdown = markdown_table(self.config_extracted_rules[rule_name]['source'],
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/mkdocs_snakemake_rule_plugin/markdown.py", line 162, in markdown_table
variables = get_input_variabels(rule_source,
File "/home/jonas/Snakemake/venv/lib/python3.10/site-packages/mkdocs_snakemake_rule_plugin/markdown.py", line 99, in get_input_variabels
key, value = re.split("[ ]=[ ]", line)
ValueError: too many values to unpack (expected 2)
The text was updated successfully, but these errors were encountered: