New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add module for Biotype QC #6

Open

grst opened this issue Nov 17, 2021 · 0 comments

Assignees

Member

grst commented Nov 17, 2021

Add a module that produces a table with differentially expressed genes by biotype.

Input:

GTF file
List of DE genes

Output:

Table
Plot

Section in the old code:
https://github.com/icbi-lab/deseq2icbi/blob/28e54a75598d39b70090376daa0e9ddefee25363/runDESeq2_ICBI.R#L249-L267

ausserh self-assigned this

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment