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Investigating failed Mutect2 calling on DO50311 #31

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junjun-zhang opened this issue Apr 27, 2021 · 0 comments

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junjun-zhang commented Apr 27, 2021

Investigating failed Mutect2 calling on DO50311, the error is related to chr13. This is likely due to some kind of issue with the aligned BAM.

in addition to the mutect2 error, there are also errors observed when using get read counts from variant sites, and DepthOfCoverage

junjun-zhang added this to the Bioinformatics Kanban milestone

lindaxiang removed this from the Bioinformatics Kanban milestone

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