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Add support for ICGC data in Azure to be indexed #44

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andricDu opened this issue Sep 14, 2021 · 0 comments

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andricDu commented Sep 14, 2021

We have about ~750TB of data transferred to Azure. We have Song and Score deployed to Azure.

There exists an implementation for indexing data from SONG: https://github.com/icgc-dcc/dcc-repository/blob/develop/dcc-repository-song/src/main/java/org/icgc/dcc/repository/song/SongImporter.java

There are already examples of this abstract class being extended by the Song, Song-PDC, and AWS importers.

The configuration will need to be extended to support configuring the dcc-importer to look at azure.
One such place is: https://github.com/icgc-dcc/dcc-repository/blob/develop/dcc-repository-core/src/main/java/org/icgc/dcc/repository/core/RepositoryFileContextBuilder.java

andricDu assigned rosibaj

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