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Fix strange exec/shell behavior in moose-dev container #28427

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milljm opened this issue Aug 19, 2024 · 0 comments · May be fixed by #28437
Closed

Fix strange exec/shell behavior in moose-dev container #28427

milljm opened this issue Aug 19, 2024 · 0 comments · May be fixed by #28437
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C: Apptainer Tickets pertaining to Singularity/Apptainer T: task An enhancement to the software.

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@milljm
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milljm commented Aug 19, 2024

Motivation

We can't exec properly:

apptainer exec oras://image 'ls /'

Design

For now, provide the fix in top-level moose-dev container. A more permanent solution should be placed in a lower container, such as mpi.def.

Impact

exec subcommands will function once more.

@milljm milljm added T: task An enhancement to the software. C: Apptainer Tickets pertaining to Singularity/Apptainer labels Aug 19, 2024
@milljm milljm self-assigned this Aug 19, 2024
milljm added a commit to milljm/moose that referenced this issue Aug 20, 2024
I am still not sure why this is needed, but it is.

Closes idaholab#28427
milljm added a commit to milljm/moose that referenced this issue Aug 29, 2024
As requested, incorporating set options we require when launching
containers with exec subcommand.

Closes idaholab#28427
milljm added a commit to milljm/moose that referenced this issue Sep 5, 2024
Remove DEBUG and other offending flags from CXXFLAGS/CPPFLAGS.

When installing moose-mpi, supply a default set of python packages
necessary to build MOOSE.

Continue to constrain to a Python range. Default Python is latest
supported version (3.11 at this commit)

Pin HDF5 to 1.14.2 due to discovered issue: idaholab#28350

As requested, incorporating `set` options we require when launching
containers with exec subcommand.

Closes idaholab#28427 idaholab#28283
milljm added a commit to milljm/moose that referenced this issue Sep 10, 2024
Remove DEBUG and other offending flags from CXXFLAGS/CPPFLAGS.

When installing moose-mpi, supply a default set of python packages
necessary to build MOOSE.

Continue to constrain to a Python range. Default Python is latest
supported version (3.11 at this commit)

Pin HDF5 to 1.14.2 due to discovered issue: idaholab#28350

As requested, incorporating `set` options we require when launching
containers with exec subcommand.

Bump SDK for Mac Intel (PETSc contrib requirement).

Closes idaholab#28427 idaholab#28283
milljm added a commit to milljm/moose that referenced this issue Sep 10, 2024
Remove DEBUG and other offending flags from CXXFLAGS/CPPFLAGS.

When installing moose-mpi, supply a default set of python packages
necessary to build MOOSE.

Continue to constrain to a Python range. Default Python is latest
supported version (3.11 at this commit)

Pin HDF5 to 1.14.2 due to discovered issue: idaholab#28350

As requested, incorporating `set` options we require when launching
containers with exec subcommand.

Bump SDK for Mac Intel (PETSc contrib requirement).

Transition to files section for exec fix

Closes idaholab#28427 idaholab#28283
milljm added a commit to milljm/moose that referenced this issue Sep 11, 2024
Remove DEBUG and other offending flags from CXXFLAGS/CPPFLAGS.

When installing moose-mpi, supply a default set of python packages
necessary to build MOOSE.

Continue to constrain to a Python range. Default Python is latest
supported version (3.11 at this commit)

Pin HDF5 to 1.14.2 due to discovered issue: idaholab#28350

As requested, incorporating `set` options we require when launching
containers with exec subcommand.

Bump SDK for Mac Intel (PETSc contrib requirement).

Transition to files section for exec fix

Closes idaholab#28427 idaholab#28283
milljm added a commit to milljm/moose that referenced this issue Sep 12, 2024
Remove DEBUG and other offending flags from CXXFLAGS/CPPFLAGS.

When installing moose-mpi, supply a default set of python packages
necessary to build MOOSE.

Continue to constrain to a Python range. Default Python is latest
supported version (3.11 at this commit)

Pin HDF5 to 1.14.2 due to discovered issue: idaholab#28350

As requested, incorporating `set` options we require when launching
containers with exec subcommand.

Bump SDK for Mac Intel (PETSc contrib requirement).

Transition to files section for exec fix

Closes idaholab#28427 idaholab#28283
@milljm milljm closed this as completed in 5175c29 Sep 17, 2024
milljm added a commit to milljm/moose that referenced this issue Sep 18, 2024
Remove DEBUG and other offending flags from CXXFLAGS/CPPFLAGS.

When installing moose-mpi, supply a default set of python packages
necessary to build MOOSE.

Continue to constrain to a Python range. Default Python is latest
supported version (3.11 at this commit)

Pin HDF5 to 1.14.2 due to discovered issue: idaholab#28350

As requested, incorporating `set` options we require when launching
containers with exec subcommand.

Bump SDK for Mac Intel (PETSc contrib requirement).

Transition to files section for exec fix

Pin several packages, as we are tired of experiencing issues with only small
bumps to build versions.

Refs idaholab#28427 idaholab#28283

Closes idaholab#28643
milljm added a commit to milljm/moose that referenced this issue Sep 18, 2024
Remove DEBUG and other offending flags from CXXFLAGS/CPPFLAGS.

When installing moose-mpi, supply a default set of python packages
necessary to build MOOSE.

Continue to constrain to a Python range. Default Python is latest
supported version (3.11 at this commit)

Pin HDF5 to 1.14.2 due to discovered issue: idaholab#28350

As requested, incorporating `set` options we require when launching
containers with exec subcommand.

Bump SDK for Mac Intel (PETSc contrib requirement).

Transition to files section for exec fix

Pin several packages, as we are tired of experiencing issues with only small
bumps to build versions.

Refs idaholab#28427 idaholab#28283

Closes idaholab#28643
milljm added a commit to milljm/moose that referenced this issue Sep 18, 2024
Remove DEBUG and other offending flags from CXXFLAGS/CPPFLAGS.

When installing moose-mpi, supply a default set of python packages
necessary to build MOOSE.

Continue to constrain to a Python range. Default Python is latest
supported version (3.11 at this commit)

Pin HDF5 to 1.14.2 due to discovered issue: idaholab#28350

As requested, incorporating `set` options we require when launching
containers with exec subcommand.

Bump SDK for Mac Intel (PETSc contrib requirement).

Transition to files section for exec fix

Pin several packages, as we are tired of experiencing issues with only small
bumps to build versions.

Refs idaholab#28427 idaholab#28283

Closes idaholab#28643
milljm added a commit to milljm/moose that referenced this issue Sep 18, 2024
Remove DEBUG and other offending flags from CXXFLAGS/CPPFLAGS.

When installing moose-mpi, supply a default set of python packages
necessary to build MOOSE.

Continue to constrain to a Python range. Default Python is latest
supported version (3.11 at this commit)

Pin HDF5 to 1.14.2 due to discovered issue: idaholab#28350

As requested, incorporating `set` options we require when launching
containers with exec subcommand.

Bump SDK for Mac Intel (PETSc contrib requirement).

Transition to files section for exec fix

Pin several packages, as we are tired of experiencing issues with only small
bumps to build versions.

Refs idaholab#28427 idaholab#28283

Closes idaholab#28643
milljm added a commit to milljm/moose that referenced this issue Sep 18, 2024
Remove DEBUG and other offending flags from CXXFLAGS/CPPFLAGS.

When installing moose-mpi, supply a default set of python packages
necessary to build MOOSE.

Continue to constrain to a Python range. Default Python is latest
supported version (3.11 at this commit)

Pin HDF5 to 1.14.2 due to discovered issue: idaholab#28350

As requested, incorporating `set` options we require when launching
containers with exec subcommand.

Bump SDK for Mac Intel (PETSc contrib requirement).

Transition to files section for exec fix

Pin several packages, as we are tired of experiencing issues with only small
bumps to build versions.

Refs idaholab#28427 idaholab#28283

Closes idaholab#28643
milljm added a commit to milljm/moose that referenced this issue Oct 1, 2024
Remove DEBUG and other offending flags from CXXFLAGS/CPPFLAGS.

When installing moose-mpi, supply a default set of python packages
necessary to build MOOSE.

Continue to constrain to a Python range. Default Python is latest
supported version (3.11 at this commit)

Pin HDF5 to 1.14.2 due to discovered issue: idaholab#28350

As requested, incorporating `set` options we require when launching
containers with exec subcommand.

Bump SDK for Mac Intel (PETSc contrib requirement).

Transition to files section for exec fix

Pin several packages, as we are tired of experiencing issues with only small
bumps to build versions.

Refs idaholab#28427 idaholab#28283

Closes idaholab#28643
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